The clml Reference Manual

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The clml Reference Manual

This is the clml Reference Manual, generated automatically by Declt version 2.3 "Robert April" on Wed Mar 14 03:42:21 2018 GMT+0.


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1 Introduction

Table of Contents

CL Machine-Learning Build Status

CL Machine-Learning is high performance and large scale statistical machine learning package written in Common Lisp developed at MSI.

This repository contains is a authorized fork of the original CLML with the following goals in mind:

Author(s):

Original

Current Branch Maintainer(s)/Authors(s):

Contributors:

Installation

Requirements

Note: Default heapsize should be around 2560K (On some systems it may need to be greater) for SBCL this can be done by set with the switch

    sbcl --dynamic-space-size 2560

If running sbcl with roswell

    ros dynamic-space-size=2560 run

Currently development is taking place mostly on SBCL. For the near future SBCL is most stable platform.

Installation Notes

Obtaining code

Code can be obtained by one of the following methods:

Or download zip archive at

https://github.com/mmaul/clml/archive/master.zip

Installing

  1. For Quicklisp **

    1. Place code in ~/quicklisp/local-projects
    2. Start LISP and enter (ql:quickload :clml :verbose t)
  2. DONE For ASDF3 only (Non quicklisp users)

    1. Place in a location on your ASDF search path path such as ~/common-lisp
    2. Start LISP and enter (asdf:load-system :clml)

Documentation

User and API Documentation

and also in the project directories docs/clml-manual.html.

found in the project directory docs/notes files in memo, notes and docs

Sample Data

The sample datasets are located outside the CLML repository. Fortunately CLML is able to download sample datasets from remote sites via HTTP and HTTPS via the clml.utility.data:fetch function. Shown below is an example:

(clml.utility.data:fetch "https://mmaul.github.io/clml.data/sample/airquality.csv")

The clml.utility.data:fetch function downloads the file to a cache location and returns the path to the downloaded file. Therefore anywhere a path to a file is required the output from clml.utility.data:fetch can be provided instead.

The contents of the Sample dataset repository can be found at:

Usage

This library is organized as a hierarchical tree of systems.

Each system can be loaded independantly or the the clml system can be loaded which contains dependencies to all child system definitions.

This library requires that default reader float for mat is set to double-float. This should be done before loading the systems.

(setf *read-default-float-format* 'double-float)

Here is a quick demonstration:

CL-USER (ql:quickload :clml)

CL-USER (clml.text.utilities:calculate-levenshtein-similarity "Howdy" "doody")
0.6
CL-USER 
CL-USER (setf *syobu* (clml.hjs.read-data:read-data-from-file 
           (clml.utility.data:fetch "https://mmaul.github.io/clml.data/sample/syobu.csv")
           :type :csv :csv-type-spec '(string integer integer integer integer)))


#<HJS.LEARN.READ-DATA:UNSPECIALIZED-DATASET >
DIMENSIONS: 種類 | がく長 | がく幅 | 花びら長 | 花びら幅
TYPES:      UNKNOWN | UNKNOWN | UNKNOWN | UNKNOWN | UNKNOWN
NUMBER OF DIMENSIONS: 5
DATA POINTS: 150 POINTS

CL-USER (setf *tree* (clml.decision-tree.decision-tree:make-decision-tree *syobu* "種類"))


(((("花びら長" . 30)
   (("花びら幅" . 18) ("花びら幅" . 23) ("花びら幅" . 20) ("花びら幅" . 19) ("花びら幅" . 25)
    ("花びら幅" . 24) ("花びら幅" . 21) ("花びら幅" . 14) ("花びら幅" . 15) ("花びら幅" . 22)
     ("花びら幅" . 16) ("花びら幅" . 17) ("花びら幅" . 13) ("花びら幅" . 11) ("花びら幅" . 12)
  ...
  (("Virginica" . 50) ("Versicolor" . 50) ("Setosa" . 50))
  ((149 148 147 146 145 144 143 142 141 140 139 138 137 136 135 134 133 132 131
  ...
 (((("花びら幅" . 18)
    (("花びら幅" . 23) ("花びら幅" . 20) ("花びら幅" . 19) ("花びら幅" . 25) ("花びら幅" . 24)
     ("花びら幅" . 21) ("花びら幅" . 14) ("花びら幅" . 15) ("花びら幅" . 22) ("花びら幅" . 16)
     ("花びら幅" . 17) ("花びら幅" . 13) ("花びら幅" . 11) ("花びら幅" . 12) ("花びら幅" . 10)
 ...

)))
CL-USER    
CL-USER  (clml.decision-tree.decision-tree:print-decision-tree *tree*)
    [30 <= 花びら長?]((Virginica . 50) (Versicolor . 50) (Setosa . 50))
       Yes->[18 <= 花びら幅?]((Versicolor . 50) (Virginica . 50))
         Yes->[49 <= 花びら長?]((Virginica . 45) (Versicolor . 1))
             Yes->((Virginica . 43))
             No->[60 <= がく長?]((Versicolor . 1) (Virginica . 2))
                Yes->((Virginica . 2))
                No->((Versicolor . 1))
          No->[50 <= 花びら長?]((Virginica . 5) (Versicolor . 49))
             Yes->[16 <= 花びら幅?]((Versicolor . 2) (Virginica . 4))
                Yes->[70 <= がく長?]((Virginica . 1) (Versicolor . 2))
                   Yes->((Virginica . 1))
                   No->((Versicolor . 2))
                No->((Virginica . 3))
             No->[17 <= 花びら幅?]((Versicolor . 47) (Virginica . 1))
                Yes->((Virginica . 1))
                  No->((Versicolor . 47))
       No->((Setosa . 50))

Tests

CLML uses the [[https://github.com/OdonataResearchLLC/lisp-unit][lispunit] testing framwork. Tests are located in the tests directory. The tests provide useful examples of usage of the CLML API.

Compiling and running all unit tests can be ran as shown below.

(ql:quickload :clml.test :verbose t)
(in-package :clml.test)
(run-all-tests)

More information can gained on the useage of lispunit by visiting the project website. However some basic hints. The run- forms return a TEST-RESULTS-DB object. The test results database can be queried for information about the tests previously ran.

(defparameter myrun (run-all-tests))
(print-errors myrun) ; prints details of test errors
(print-failures myrun) ; prints details of test failures

Individual tests can be ran by the run-tests form. Individual test being dests defined with the form define-test.

(run-tests '(matrix-vecs-conversion-test  matrix-transpose-test))

Tests for CLML systes have been grouped in tests/test-groups.lisp for convience.

(run-tests *clustering-tests*)

Building Documentation

CLML uses the a modified version of the CLOD package for it's dcumentation system. Specific details of using clod can be found most easily in the clod api documentation] at quickdocs

(ql:quickload :clml.docs :verbose t)
(in-package :clml.docs)
(generate-clml-api-docs)

The generate-clml-api-docs form enerates Org API documentation in the clml/docs/api directory from loaded packages for CLML for packages matching the following prefix patterns:

+^clml[.]
+^lapack
+^hjs
+blas
+^future
+^fork-future

Documentation is in the form of Org files where one Org file per package is placed in clml/docs/api. A package index file containing Org INCLUDE directives that include Org files generated by the form generate-clml-api-docs are placed in clml/docs/api/index.org.

The CLML users manual includes the generated API documentation file index.org, HTML documentation can then be generated by opening the clml-manual.org file in Emacs and entering the Org mode export mode with C-c C-e and selecting file export with h h

The README.md file is generated by the org-mode export function. Which can be done by opening the README.org file in emacs and entering org-mode and using the export function C-c C-e and selecting the markdown export option as shown below.

M-x org-md-export-as-markdown
C-x-C-w README.md

The CMLM manual and API documentation can be exported to the desired format by opening the docs/clml-manual.org and using the org-mode export C-c C-e cord.

Related Repositories

Contributing

All contributions are welcome. If the contribution is to resolve and problem with CLML, please open an issue in the github repository accompanied by a pull request.

If you would like to contribute new functionality, again open an issue at the clml github repository, describe the proposed functionality and we will go from there. There is a separate repository clml.extras (<h


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2 Systems

The main system appears first, followed by any subsystem dependency.


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2.1 clml

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

Reorginized CLML (Common Lisp Machine Learming) library from MSI

Dependencies
Source

clml.asd (file)

Component

package.lisp (file)


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2.2 clml.classifiers

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML Classifiers Library

Dependencies
Source

clml.classifiers.asd (file)

Components

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2.3 clml.svm

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML SVM Library

Dependencies
Source

clml.svm.asd (file)

Components

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2.4 clml.clustering

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML Clustering Library

Dependencies
Source

clml.clustering.asd (file)

Components

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2.5 clml.graph

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML graph library

Dependencies
Source

clml.graph.asd (file)

Components

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2.6 clml.association-rule

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

Reorginized CLML (Common Lisp Machine Learming) library from MSI

Dependency

clml.hjs (system)

Source

clml.association-rule.asd (file)

Components

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2.7 clml.nearest-search

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML Nearest Search

Dependencies
Source

clml.nearest-search.asd (file)

Components

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2.8 clml.pca

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML Principal Component Analysis Library

Dependencies
Source

clml.pca.asd (file)

Components

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2.9 clml.decision-tree

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML Decision Tree Library

Dependencies
Source

clml.decision-tree.asd (file)

Components

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2.10 clml.som

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML Self Organizing Map Library

Dependencies
Source

clml.som.asd (file)

Components

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2.11 clml.text

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML Text Analysis and Utilities Library

Dependencies
Source

clml.text.asd (file)

Components

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2.12 clml.nonparametric

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML Nonparametric Library

Dependency

clml.hjs (system)

Source

clml.nonparametric.asd (file)

Components

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2.13 clml.time-series

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML Time Series Analysis Library

Dependencies
Source

clml.time-series.asd (file)

Components

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2.14 clml.numeric

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML Numeric Library

Dependency

clml.hjs (system)

Source

clml.numeric.asd (file)

Components

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2.15 clml.data

Dependency

clml.data.r-datasets (system)

Source

clml.data.asd (file)


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2.16 clml.data.r-datasets

Dependencies
Source

clml.data.r-datasets.asd (file)

Component

r-datasets.lisp (file)


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2.17 clml.hjs

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML core

Dependencies
Source

clml.hjs.asd (file)

Components

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2.18 clml.lapack

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML LAPACK

Dependencies
Source

clml.lapack.asd (file)


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2.19 clml.lapack-real

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML lapack (real)

Dependencies
Source

clml.lapack.asd (file)

Components

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2.20 clml.blas

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML BLAS (Complex)

Dependencies
Source

clml.blas.asd (file)


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2.21 clml.blas.hompack

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML BLAS Library (hompack)

Dependency

f2cl-lib (system)

Source

clml.blas.asd (file)

Components

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2.22 clml.blas.real

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors:(One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML BLAS Library (Reals)

Dependency

f2cl-lib (system)

Source

clml.blas.asd (file)

Components

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2.23 clml.blas.complex

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML BLAS (Complex)

Dependency

f2cl-lib (system)

Source

clml.blas.asd (file)

Components

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2.24 f2cl-lib

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

f2cl autor

License

LLGPL

Description

Macro library autogenerated by f2cl

Source

f2cl-lib.asd (file)

Components

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2.25 future

Author

Jianshi Huang @ Mathematical Systems Inc. (huang@msi.co.jp)

Description

Fork-future is a thread based future parallel library

Version

0.1.20100317

Dependency

alexandria

Source

future.asd (file)

Component

src (module)


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2.26 clml.statistics

Author

Peter Salvi / MSI (statistics), Ryo Fujii (statistics & distribution), Yotsutsuji Tetsuaki (rand)

License

LLGPL

Description

Statistics Library

Dependency

clml.statistics.rand (system)

Source

clml.statistics.asd (file)

Components

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2.27 clml.statistics.rand

Author

Yotsutsuji Tetsuaki

License

LLGPL

Description

CLML Probability distribution random number generation method Library

Source

clml.statistics.rand.asd (file)

Component

clml.statistics.rand (module)


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2.28 clml.utility

Maintainer

Mike Maul <maul.mike@gmail.com>

Author

Original Authors: (One or more of) Salvi Péter, Naganuma Shigeta, Tada Masashi, Abe Yusuke, Jianshi Huang, Fujii Ryo, Abe Seika, Kuroda Hisao Author Post MSI CLML Contribution: Mike Maul <maul.mike@gmail.com>

License

LLGPL

Description

CLML Utility Library

Dependencies
Source

clml.utility.asd (file)

Components

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2.29 clml.data.r-datasets-package

Source

clml.data.r-datasets.asd (file)

Component

package.lisp (file)


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3 Modules

Modules are listed depth-first from the system components tree.


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3.1 future/src

Parent

future (system)

Location

addons/future/src/

Components

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3.2 clml.statistics/statistics

Parent

clml.statistics (system)

Location

statistics/src/

Components

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3.3 clml.statistics.rand/clml.statistics.rand

Parent

clml.statistics.rand (system)

Location

statistics/src/rand/

Components

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4 Files

Files are sorted by type and then listed depth-first from the systems components trees.


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4.1 Lisp


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4.1.1 clml.asd

Location

clml.asd

Systems

clml (system)

Packages

clml-system

Internal Definitions

call-with-clml-environment (function)


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4.1.2 clml.classifiers.asd

Location

classifiers/clml.classifiers.asd

Systems

clml.classifiers (system)

Packages

clml.classifiers-environment

Internal Definitions

call-with-environment (function)


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4.1.3 clml.svm.asd

Location

svm/clml.svm.asd

Systems

clml.svm (system)

Packages

clml.svm-asd

Internal Definitions

call-with-environment (function)


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4.1.4 clml.clustering.asd

Location

clustering/clml.clustering.asd

Systems

clml.clustering (system)


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4.1.5 clml.graph.asd

Location

graph/clml.graph.asd

Systems

clml.graph (system)

Packages

clml.graph-environment

Internal Definitions

call-with-environment (function)


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4.1.6 clml.association-rule.asd

Location

association-rule/clml.association-rule.asd

Systems

clml.association-rule (system)

Packages

clml.association-rule-environment

Internal Definitions

call-with-environment (function)


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4.1.7 clml.nearest-search.asd

Location

nearest-search/clml.nearest-search.asd

Systems

clml.nearest-search (system)

Packages

clml.nearest-search-environment

Internal Definitions

call-with-environment (function)


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4.1.8 clml.pca.asd

Location

pca/clml.pca.asd

Systems

clml.pca (system)

Packages

clml.pca-environment

Internal Definitions

call-with-environment (function)


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4.1.9 clml.decision-tree.asd

Location

decision-tree/clml.decision-tree.asd

Systems

clml.decision-tree (system)


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4.1.10 clml.som.asd

Location

som/clml.som.asd

Systems

clml.som (system)

Packages

clml.som-environment

Internal Definitions

call-with-environment (function)


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4.1.11 clml.text.asd

Location

text/clml.text.asd

Systems

clml.text (system)

Packages

clml.text-environment

Internal Definitions

call-with-environment (function)


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4.1.12 clml.nonparametric.asd

Location

nonparametric/clml.nonparametric.asd

Systems

clml.nonparametric (system)

Packages

clml.nonparametric-environment

Internal Definitions

call-with--environment (function)


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4.1.13 clml.time-series.asd

Location

time-series/clml.time-series.asd

Systems

clml.time-series (system)

Packages

clml.time-series-environment

Internal Definitions

call-with-environment (function)


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4.1.14 clml.numeric.asd

Location

numeric/clml.numeric.asd

Systems

clml.numeric (system)

Packages

clml.numeric-environment

Internal Definitions

call-with-environment (function)


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4.1.15 clml.data.asd

Location

data/clml.data.asd

Systems

clml.data (system)


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4.1.16 clml.hjs.asd

Location

hjs/clml.hjs.asd

Systems

clml.hjs (system)

Packages

clml.hjs-environment

Internal Definitions

call-with-environment (function)


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4.1.17 clml.lapack.asd

Location

lapack/clml.lapack.asd

Systems
Packages

clml.lapack-environment

Internal Definitions

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4.1.18 clml.blas.asd

Location

blas/clml.blas.asd

Systems

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4.1.19 f2cl-lib.asd

Location

blas/f2cl-lib.asd

Systems

f2cl-lib (system)

Packages

clml.blas-environment

Internal Definitions

call-with-environment (function)


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4.1.20 future.asd

Location

addons/future/future.asd

Systems

future (system)


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4.1.21 clml.statistics.asd

Location

statistics/clml.statistics.asd

Systems

clml.statistics (system)

Packages

clml.statistics-environment

Internal Definitions

call-with-environment (function)


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4.1.22 clml.statistics.rand.asd

Location

statistics/clml.statistics.rand.asd

Systems

clml.statistics.rand (system)


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4.1.23 clml.utility.asd

Location

utility/clml.utility.asd

Systems

clml.utility (system)

Packages

clml.statistics.rand-environment

Internal Definitions

call-with-environment (function)


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4.1.24 clml.data.r-datasets.asd

Location

data/r-datasets/clml.data.r-datasets.asd

Systems

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4.1.25 clml/package.lisp

Parent

clml (system)

Location

package.lisp

Packages

clml


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4.1.26 clml.classifiers/package.lisp

Parent

clml.classifiers (system)

Location

classifiers/src/package.lisp

Packages

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4.1.27 clml.classifiers/logistic.lisp

Dependency

package.lisp (file)

Parent

clml.classifiers (system)

Location

classifiers/src/logistic.lisp

Internal Definitions

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4.1.28 clml.classifiers/linear-regression.lisp

Dependency

logistic.lisp (file)

Parent

clml.classifiers (system)

Location

classifiers/src/linear-regression.lisp

Exported Definitions
Internal Definitions

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4.1.29 clml.classifiers/nbayes.lisp

Dependency

linear-regression.lisp (file)

Parent

clml.classifiers (system)

Location

classifiers/src/nbayes.lisp

Exported Definitions
Internal Definitions

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4.1.30 clml.svm/package.lisp

Parent

clml.svm (system)

Location

svm/src/package.lisp

Packages

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4.1.31 clml.svm/wss3-svm.lisp

Dependency

package.lisp (file)

Parent

clml.svm (system)

Location

svm/src/wss3-svm.lisp

Exported Definitions
Internal Definitions

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4.1.32 clml.svm/svm.lisp

Dependency

wss3-svm.lisp (file)

Parent

clml.svm (system)

Location

svm/src/svm.lisp

Exported Definitions
Internal Definitions

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4.1.33 clml.svm/one-class-svm.lisp

Dependency

svm.lisp (file)

Parent

clml.svm (system)

Location

svm/src/one-class-svm.lisp

Exported Definitions
Internal Definitions

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4.1.34 clml.svm/pwss3-svm.lisp

Dependency

one-class-svm.lisp (file)

Parent

clml.svm (system)

Location

svm/src/pwss3-svm.lisp

Exported Definitions
Internal Definitions

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4.1.35 clml.svm/smo-svm.lisp

Dependency

pwss3-svm.lisp (file)

Parent

clml.svm (system)

Location

svm/src/smo-svm.lisp

Exported Definitions
Internal Definitions

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4.1.36 clml.svm/svr.lisp

Dependency

smo-svm.lisp (file)

Parent

clml.svm (system)

Location

svm/src/svr.lisp

Exported Definitions
Internal Definitions

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4.1.37 clml.clustering/package.lisp

Parent

clml.clustering (system)

Location

clustering/src/package.lisp

Packages

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4.1.38 clml.clustering/hc.lisp

Dependency

package.lisp (file)

Parent

clml.clustering (system)

Location

clustering/src/hc.lisp

Exported Definitions
Internal Definitions

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4.1.39 clml.clustering/nmf.lisp

Dependency

hc.lisp (file)

Parent

clml.clustering (system)

Location

clustering/src/nmf.lisp

Exported Definitions
Internal Definitions

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4.1.40 clml.clustering/optics.lisp

Dependency

nmf.lisp (file)

Parent

clml.clustering (system)

Location

clustering/src/optics.lisp

Exported Definitions
Internal Definitions

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4.1.41 clml.clustering/spectral-clustering.lisp

Dependency

optics.lisp (file)

Parent

clml.clustering (system)

Location

clustering/src/spectral-clustering.lisp

Exported Definitions
Internal Definitions

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4.1.42 clml.clustering/cluster-validation.lisp

Dependency

spectral-clustering.lisp (file)

Parent

clml.clustering (system)

Location

clustering/src/cluster-validation.lisp

Exported Definitions
Internal Definitions

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4.1.43 clml.clustering/optics-speed.lisp

Dependency

cluster-validation.lisp (file)

Parent

clml.clustering (system)

Location

clustering/src/optics-speed.lisp

Internal Definitions

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4.1.44 clml.clustering/k-means2.lisp

Dependency

optics-speed.lisp (file)

Parent

clml.clustering (system)

Location

clustering/src/k-means2.lisp

Internal Definitions

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4.1.45 clml.graph/package.lisp

Parent

clml.graph (system)

Location

graph/src/package.lisp

Packages

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4.1.46 clml.graph/read-graph.lisp

Dependency

package.lisp (file)

Parent

clml.graph (system)

Location

graph/src/read-graph.lisp

Exported Definitions
Internal Definitions

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4.1.47 clml.graph/anomaly-detection.lisp

Dependency

read-graph.lisp (file)

Parent

clml.graph (system)

Location

graph/src/anomaly-detection.lisp

Exported Definitions

covariance (class)

Internal Definitions

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4.1.48 clml.graph/centrality.lisp

Dependency

anomaly-detection.lisp (file)

Parent

clml.graph (system)

Location

graph/src/centrality.lisp

Exported Definitions
Internal Definitions

transition-probability-matrix (function)


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4.1.49 clml.graph/shortest-path.lisp

Dependency

centrality.lisp (file)

Parent

clml.graph (system)

Location

graph/src/shortest-path.lisp

Exported Definitions

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4.1.50 clml.graph/utils.lisp

Dependency

shortest-path.lisp (file)

Parent

clml.graph (system)

Location

graph/src/utils.lisp

Exported Definitions

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4.1.51 clml.association-rule/package.lisp

Parent

clml.association-rule (system)

Location

association-rule/src/package.lisp

Packages

clml.association-rule


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4.1.52 clml.association-rule/association-rule.lisp

Dependency

package.lisp (file)

Parent

clml.association-rule (system)

Location

association-rule/src/association-rule.lisp

Exported Definitions
Internal Definitions

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4.1.53 clml.association-rule/fp-growth.lisp

Dependency

association-rule.lisp (file)

Parent

clml.association-rule (system)

Location

association-rule/src/fp-growth.lisp

Exported Definitions

%association-analyze-fp-growth (function)

Internal Definitions

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4.1.54 clml.association-rule/assoc-da.lisp

Dependency

fp-growth.lisp (file)

Parent

clml.association-rule (system)

Location

association-rule/src/assoc-da.lisp

Exported Definitions
Internal Definitions

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4.1.55 clml.association-rule/eclat.lisp

Dependency

assoc-da.lisp (file)

Parent

clml.association-rule (system)

Location

association-rule/src/eclat.lisp

Exported Definitions

%association-analyze-eclat (function)

Internal Definitions

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4.1.56 clml.association-rule/lcm.lisp

Dependency

eclat.lisp (file)

Parent

clml.association-rule (system)

Location

association-rule/src/lcm.lisp

Exported Definitions

%association-analyze-lcm (function)

Internal Definitions

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4.1.57 clml.nearest-search/package.lisp

Parent

clml.nearest-search (system)

Location

nearest-search/src/package.lisp

Packages

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4.1.58 clml.nearest-search/k-nn.lisp

Dependency

package.lisp (file)

Parent

clml.nearest-search (system)

Location

nearest-search/src/k-nn.lisp

Exported Definitions
Internal Definitions

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4.1.59 clml.nearest-search/k-nn-new.lisp

Dependency

k-nn.lisp (file)

Parent

clml.nearest-search (system)

Location

nearest-search/src/k-nn-new.lisp

Exported Definitions
Internal Definitions

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4.1.60 clml.nearest-search/nearest-search.lisp

Dependency

k-nn-new.lisp (file)

Parent

clml.nearest-search (system)

Location

nearest-search/src/nearest-search.lisp

Exported Definitions
Internal Definitions

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4.1.61 clml.pca/package.lisp

Parent

clml.pca (system)

Location

pca/src/package.lisp

Packages

clml.pca


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4.1.62 clml.pca/pca.lisp

Dependency

package.lisp (file)

Parent

clml.pca (system)

Location

pca/src/pca.lisp

Exported Definitions
Internal Definitions

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4.1.63 clml.pca/face-recognition.lisp

Dependency

pca.lisp (file)

Parent

clml.pca (system)

Location

pca/src/face-recognition.lisp

Exported Definitions
Internal Definitions

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4.1.64 clml.decision-tree/package.lisp

Parent

clml.decision-tree (system)

Location

decision-tree/src/package.lisp

Packages

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4.1.65 clml.decision-tree/decision-tree.lisp

Dependency

package.lisp (file)

Parent

clml.decision-tree (system)

Location

decision-tree/src/decision-tree.lisp

Exported Definitions
Internal Definitions

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4.1.66 clml.decision-tree/random-forest.lisp

Dependency

decision-tree.lisp (file)

Parent

clml.decision-tree (system)

Location

decision-tree/src/random-forest.lisp

Exported Definitions
Internal Definitions

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4.1.67 clml.som/package.lisp

Parent

clml.som (system)

Location

som/src/package.lisp

Packages

clml.som


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4.1.68 clml.som/param.lisp

Dependency

package.lisp (file)

Parent

clml.som (system)

Location

som/src/param.lisp

Internal Definitions

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4.1.69 clml.som/som_utils.lisp

Dependency

param.lisp (file)

Parent

clml.som (system)

Location

som/src/som_utils.lisp

Internal Definitions

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4.1.70 clml.som/lvq_pak.lisp

Dependency

som_utils.lisp (file)

Parent

clml.som (system)

Location

som/src/lvq_pak.lisp

Internal Definitions

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4.1.71 clml.som/labels.lisp

Dependency

lvq_pak.lisp (file)

Parent

clml.som (system)

Location

som/src/labels.lisp

Internal Definitions

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4.1.72 clml.som/fileio.lisp

Dependency

labels.lisp (file)

Parent

clml.som (system)

Location

som/src/fileio.lisp

Internal Definitions

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4.1.73 clml.som/datafile.lisp

Dependency

fileio.lisp (file)

Parent

clml.som (system)

Location

som/src/datafile.lisp

Internal Definitions

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4.1.74 clml.som/randinit.lisp

Dependency

datafile.lisp (file)

Parent

clml.som (system)

Location

som/src/randinit.lisp

Internal Definitions

randinit (function)


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4.1.75 clml.som/som_rout.lisp

Dependency

randinit.lisp (file)

Parent

clml.som (system)

Location

som/src/som_rout.lisp

Internal Definitions

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4.1.76 clml.som/som_pak.lisp

Dependency

som_rout.lisp (file)

Parent

clml.som (system)

Location

som/src/som_pak.lisp

Exported Definitions

do-som-by-filename (function)

Internal Definitions

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4.1.77 clml.som/vsom.lisp

Dependency

som_pak.lisp (file)

Parent

clml.som (system)

Location

som/src/vsom.lisp

Internal Definitions

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4.1.78 clml.som/vcal.lisp

Dependency

vsom.lisp (file)

Parent

clml.som (system)

Location

som/src/vcal.lisp

Internal Definitions

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4.1.79 clml.som/sammon.lisp

Dependency

vcal.lisp (file)

Parent

clml.som (system)

Location

som/src/sammon.lisp

Internal Definitions

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4.1.80 clml.som/visual.lisp

Dependency

sammon.lisp (file)

Parent

clml.som (system)

Location

som/src/visual.lisp

Internal Definitions

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4.1.81 clml.text/package.lisp

Parent

clml.text (system)

Location

text/src/package.lisp

Packages

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4.1.82 clml.text/text-utils.lisp

Dependency

package.lisp (file)

Parent

clml.text (system)

Location

text/src/text-utils.lisp

Exported Definitions
Internal Definitions

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4.1.83 clml.text/hdp-lda.lisp

Dependency

text-utils.lisp (file)

Parent

clml.text (system)

Location

text/src/hdp-lda.lisp

Exported Definitions
Internal Definitions

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4.1.84 clml.nonparametric/package.lisp

Parent

clml.nonparametric (system)

Location

nonparametric/src/package.lisp

Packages

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4.1.85 clml.nonparametric/statistics.lisp

Dependency

package.lisp (file)

Parent

clml.nonparametric (system)

Location

nonparametric/src/statistics.lisp

Exported Definitions
Internal Definitions

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4.1.86 clml.nonparametric/gamma.lisp

Dependency

statistics.lisp (file)

Parent

clml.nonparametric (system)

Location

nonparametric/src/gamma.lisp

Exported Definitions
Internal Definitions

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4.1.87 clml.nonparametric/dpm.lisp

Dependency

gamma.lisp (file)

Parent

clml.nonparametric (system)

Location

nonparametric/src/dpm.lisp

Exported Definitions
Internal Definitions

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4.1.88 clml.nonparametric/multi-dpm.lisp

Dependency

dpm.lisp (file)

Parent

clml.nonparametric (system)

Location

nonparametric/src/multi-dpm.lisp

Exported Definitions
Internal Definitions

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4.1.89 clml.nonparametric/hdp-lda.lisp

Dependency

multi-dpm.lisp (file)

Parent

clml.nonparametric (system)

Location

nonparametric/src/hdp-lda.lisp

Exported Definitions
Internal Definitions

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4.1.90 clml.nonparametric/hdp.lisp

Dependency

hdp-lda.lisp (file)

Parent

clml.nonparametric (system)

Location

nonparametric/src/hdp.lisp

Exported Definitions
Internal Definitions

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4.1.91 clml.nonparametric/hdp-hmm-class.lisp

Dependency

hdp.lisp (file)

Parent

clml.nonparametric (system)

Location

nonparametric/src/hdp-hmm-class.lisp

Exported Definitions

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4.1.92 clml.nonparametric/hdp-hmm.lisp

Dependency

hdp-hmm-class.lisp (file)

Parent

clml.nonparametric (system)

Location

nonparametric/src/hdp-hmm.lisp

Exported Definitions

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4.1.93 clml.nonparametric/gauss-hmm.lisp

Dependency

hdp-hmm.lisp (file)

Parent

clml.nonparametric (system)

Location

nonparametric/src/gauss-hmm.lisp

Exported Definitions
Internal Definitions

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4.1.94 clml.nonparametric/sticky-hdp-hmm.lisp

Dependency

gauss-hmm.lisp (file)

Parent

clml.nonparametric (system)

Location

nonparametric/src/sticky-hdp-hmm.lisp

Exported Definitions
Internal Definitions

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4.1.95 clml.nonparametric/blocked-hdp-hmm.lisp

Dependency

sticky-hdp-hmm.lisp (file)

Parent

clml.nonparametric (system)

Location

nonparametric/src/blocked-hdp-hmm.lisp

Exported Definitions
Internal Definitions

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4.1.96 clml.nonparametric/ihmm.lisp

Dependency

blocked-hdp-hmm.lisp (file)

Parent

clml.nonparametric (system)

Location

nonparametric/src/ihmm.lisp

Exported Definitions
Internal Definitions

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4.1.97 clml.nonparametric/ftm.lisp

Dependency

ihmm.lisp (file)

Parent

clml.nonparametric (system)

Location

nonparametric/src/ftm.lisp

Exported Definitions
Internal Definitions

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4.1.98 clml.nonparametric/dpm-interface.lisp

Dependency

ftm.lisp (file)

Parent

clml.nonparametric (system)

Location

nonparametric/src/dpm-interface.lisp

Exported Definitions
Internal Definitions

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4.1.99 clml.time-series/package.lisp

Parent

clml.time-series (system)

Location

time-series/src/package.lisp

Packages

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4.1.100 clml.time-series/ts-util-classes.lisp

Dependency

package.lisp (file)

Parent

clml.time-series (system)

Location

time-series/src/ts-util-classes.lisp


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4.1.101 clml.time-series/ts-state-space-model-classes.lisp

Dependency

ts-util-classes.lisp (file)

Parent

clml.time-series (system)

Location

time-series/src/ts-state-space-model-classes.lisp

Exported Definitions

state-space-model (class)


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4.1.102 clml.time-series/ts-ar-classes.lisp

Dependency

ts-state-space-model-classes.lisp (file)

Parent

clml.time-series (system)

Location

time-series/src/ts-ar-classes.lisp

Exported Definitions

ar-model (class)

Internal Definitions

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4.1.103 clml.time-series/ts-read-data.lisp

Dependency

ts-ar-classes.lisp (file)

Parent

clml.time-series (system)

Location

time-series/src/ts-read-data.lisp

Exported Definitions
Internal Definitions

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4.1.104 clml.time-series/ts-util.lisp

Dependency

ts-read-data.lisp (file)

Parent

clml.time-series (system)

Location

time-series/src/ts-util.lisp

Exported Definitions
Internal Definitions

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4.1.105 clml.time-series/ts-stat.lisp

Dependency

ts-util.lisp (file)

Parent

clml.time-series (system)

Location

time-series/src/ts-stat.lisp

Exported Definitions
Internal Definitions

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4.1.106 clml.time-series/ts-state-space-model.lisp

Dependency

ts-stat.lisp (file)

Parent

clml.time-series (system)

Location

time-series/src/ts-state-space-model.lisp

Exported Definitions
Internal Definitions

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4.1.107 clml.time-series/ts-ar.lisp

Dependency

ts-state-space-model.lisp (file)

Parent

clml.time-series (system)

Location

time-series/src/ts-ar.lisp

Exported Definitions
Internal Definitions

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4.1.108 clml.time-series/changefinder.lisp

Dependency

ts-ar.lisp (file)

Parent

clml.time-series (system)

Location

time-series/src/changefinder.lisp

Exported Definitions
Internal Definitions

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4.1.109 clml.time-series/ts-anomaly-detection.lisp

Dependency

changefinder.lisp (file)

Parent

clml.time-series (system)

Location

time-series/src/ts-anomaly-detection.lisp

Exported Definitions
Internal Definitions