The cytoscape-clj Reference Manual

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The cytoscape-clj Reference Manual

This is the cytoscape-clj Reference Manual, version 0.2.18, generated automatically by Declt version 3.0 "Montgomery Scott" on Tue Dec 22 13:14:07 2020 GMT+0.


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1 Introduction

cytoscape-clj

A common-lisp-jupyter widget for cytoscape.js.

Installation

The Jupyter Lab frontend code should be installed using the following command:

jupyter-labextension install cytoscape-clj

Once the extension has been installed then widget can be loaded in a notebook using Quicklisp.

(ql:quickload :kekule-clj)

Usage

For sample notebooks please see the examples directory. The main widgets are cytoscape-widget and element. For example to create and display a graph use the following.

(make-intance 'cytoscape:cytoscape-widget
              :graph-layouts (list (make-instance 'cytoscape:cose-layout))
              :graph-style "node { label: data(id); }"
              :elements (list (make-instance 'cytoscape:element
                                             :group "nodes"
                                             :data `(("id" . "a")))
                              (make-instance 'cytoscape:element
                                             :group "nodes"
                                             :data `(("id" . "b")))
                              (make-instance 'cytoscape:element
                                             :group "nodes"
                                             :data `(("id" . "c")))
                              (make-instance 'cytoscape:element
                                             :group "edges"
                                             :data `(("source" . "a")
                                                     ("target" . "b")))
                              (make-instance 'cytoscape:element
                                             :group "edges"
                                             :data `(("source" . "a")
                                                     ("target" . "c")))
                              (make-instance 'cytoscape:element
                                             :group "edges"
                                             :data `(("source" . "b")
                                                     ("target" . "c")))))

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2 Systems

The main system appears first, followed by any subsystem dependency.


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2.1 cytoscape-clj

Author

Tarn W. Burton

License

MIT

Description

A cytoscape widget for Common Lisp Jupyter.

Version

0.2.18

Dependencies
Source

cytoscape-clj.asd (file)

Component

src (module)


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3 Modules

Modules are listed depth-first from the system components tree.


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3.1 cytoscape-clj/src

Parent

cytoscape-clj (system)

Location

src/

Components

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4 Files

Files are sorted by type and then listed depth-first from the systems components trees.


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4.1 Lisp


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4.1.1 cytoscape-clj.asd

Location

cytoscape-clj.asd

Systems

cytoscape-clj (system)


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4.1.2 cytoscape-clj/src/packages.lisp

Parent

src (module)

Location

src/packages.lisp

Packages

cytoscape


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4.1.3 cytoscape-clj/src/version.lisp

Dependency

packages.lisp (file)

Parent

src (module)

Location

src/version.lisp

Internal Definitions

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4.1.4 cytoscape-clj/src/context-menu.lisp

Dependency

version.lisp (file)

Parent

src (module)

Location

src/context-menu.lisp

Exported Definitions
Internal Definitions

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4.1.5 cytoscape-clj/src/graph-layout.lisp

Dependency

context-menu.lisp (file)

Parent

src (module)

Location

src/graph-layout.lisp

Exported Definitions
Internal Definitions

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4.1.6 cytoscape-clj/src/cytoscape.lisp

Dependency

graph-layout.lisp (file)

Parent

src (module)

Location

src/cytoscape.lisp

Exported Definitions
Internal Definitions

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5 Packages

Packages are listed by definition order.


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5.1 cytoscape

Source

packages.lisp (file)

Use List

common-lisp

Exported Definitions
Internal Definitions

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6 Definitions

Definitions are sorted by export status, category, package, and then by lexicographic order.


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6.1 Exported definitions


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6.1.1 Functions

Function: center INSTANCE
Package

cytoscape

Source

cytoscape.lisp (file)

Function: fit-elements INSTANCE &key ELEMENTS PADDING
Package

cytoscape

Source

cytoscape.lisp (file)

Function: layout INSTANCE
Package

cytoscape

Source

cytoscape.lisp (file)

Function: on-layout-stop WIDGET HANDLER
Package

cytoscape

Source

graph-layout.lisp (file)

Function: on-menu-command-select WIDGET HANDLER

Add a new selection handler for a menu command.

Package

cytoscape

Source

context-menu.lisp (file)

Function: reset INSTANCE
Package

cytoscape

Source

cytoscape.lisp (file)

Function: toggle-fullscreen INSTANCE
Package

cytoscape

Source

cytoscape.lisp (file)


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6.1.2 Generic functions

Generic Function: %on-layout-stop OBJECT
Generic Function: (setf %on-layout-stop) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: %on-layout-stop (GRAPH-LAYOUT graph-layout)

automatically generated reader method

Source

graph-layout.lisp (file)

Method: (setf %on-layout-stop) NEW-VALUE (GRAPH-LAYOUT graph-layout)

automatically generated writer method

Source

graph-layout.lisp (file)

Generic Function: active-fill-color OBJECT
Generic Function: (setf active-fill-color) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: active-fill-color (CONTEXT-MENU context-menu)
Method: (setf active-fill-color) NEW-VALUE (CONTEXT-MENU context-menu)

the colour used to indicate the selected command

Source

context-menu.lisp (file)

Generic Function: active-padding OBJECT
Generic Function: (setf active-padding) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: active-padding (CONTEXT-MENU context-menu)
Method: (setf active-padding) NEW-VALUE (CONTEXT-MENU context-menu)

additional size in pixels for the active command

Source

context-menu.lisp (file)

Generic Function: add-graph INSTANCE VALUE &rest ARGS

Add a graph to a cytoscape widget based on value type.

Package

cytoscape

Source

cytoscape.lisp (file)

Methods
Method: add-graph INSTANCE (VALUE list) &rest ARGS
Generic Function: alignment OBJECT
Generic Function: (setf alignment) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: alignment (COLA-LAYOUT cola-layout)
Method: (setf alignment) NEW-VALUE (COLA-LAYOUT cola-layout)

Relative alignment constraints on nodes. Can also be set per node via data.

Source

graph-layout.lisp (file)

Generic Function: all-const-iter OBJECT
Generic Function: (setf all-const-iter) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: all-const-iter (COLA-LAYOUT cola-layout)
Method: (setf all-const-iter) NEW-VALUE (COLA-LAYOUT cola-layout)

Initial layout iterations with all constraints including non-overlap

Source

graph-layout.lisp (file)

Generic Function: animate OBJECT
Generic Function: (setf animate) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: animate (COMMON-SLOTS common-slots)
Method: (setf animate) NEW-VALUE (COMMON-SLOTS common-slots)

Whether to animate changes to the layout

Source

graph-layout.lisp (file)

Generic Function: animation-duration OBJECT
Generic Function: (setf animation-duration) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: animation-duration (ANIMATION-SLOTS animation-slots)
Method: (setf animation-duration) NEW-VALUE (ANIMATION-SLOTS animation-slots)

Duration of animation in ms, if enabled

Source

graph-layout.lisp (file)

Generic Function: animation-easing OBJECT
Generic Function: (setf animation-easing) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: animation-easing (ANIMATION-SLOTS animation-slots)
Method: (setf animation-easing) NEW-VALUE (ANIMATION-SLOTS animation-slots)

Easing of animation, if enabled

Source

graph-layout.lisp (file)

Generic Function: at-mouse OBJECT
Generic Function: (setf at-mouse) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: at-mouse (CONTEXT-MENU context-menu)
Method: (setf at-mouse) NEW-VALUE (CONTEXT-MENU context-menu)

draw menu at mouse position

Source

context-menu.lisp (file)

Generic Function: auto-ungrabify OBJECT
Generic Function: (setf auto-ungrabify) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: auto-ungrabify (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf auto-ungrabify) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

Whether nodes should be ungrabified (not grabbable by user) by default (if true, overrides individual node state).

Source

cytoscape.lisp (file)

Generic Function: auto-unselectify OBJECT
Generic Function: (setf auto-unselectify) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: auto-unselectify (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf auto-unselectify) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

Whether nodes should be unselectified (immutable selection state) by default (if true, overrides individual element state).

Source

cytoscape.lisp (file)

Generic Function: autolock OBJECT
Generic Function: (setf autolock) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: autolock (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf autolock) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

Whether nodes should be locked (not draggable at all) by default (if true, overrides individual node state).

Source

cytoscape.lisp (file)

Generic Function: avoid-overlap OBJECT
Generic Function: (setf avoid-overlap) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: avoid-overlap (AVOID-OVERLAP-SLOT avoid-overlap-slot)
Method: (setf avoid-overlap) NEW-VALUE (AVOID-OVERLAP-SLOT avoid-overlap-slot)

Prevents node overlap, may overflow boundingBox if not enough space

Source

graph-layout.lisp (file)

Generic Function: avoid-overlap-padding OBJECT
Generic Function: (setf avoid-overlap-padding) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: avoid-overlap-padding (GRID-LAYOUT grid-layout)
Method: (setf avoid-overlap-padding) NEW-VALUE (GRID-LAYOUT grid-layout)

Extra spacing around nodes when avoidOverlap: true

Source

graph-layout.lisp (file)

Generic Function: bounding-box OBJECT
Generic Function: (setf bounding-box) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: bounding-box (BOUNDING-BOX-SLOT bounding-box-slot)
Method: (setf bounding-box) NEW-VALUE (BOUNDING-BOX-SLOT bounding-box-slot)

constrain layout bounds; { x1, y1, x2, y2 } or { x1, y1, w, h }

Source

graph-layout.lisp (file)

Generic Function: box-selection-enabled OBJECT
Generic Function: (setf box-selection-enabled) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: box-selection-enabled (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf box-selection-enabled) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

Whether box selection (i.e. drag a box overlay around, and
release it to select) is enabled. If enabled while panning is also enabled, the user must use a modifier key (shift, alt, control, or command) to use box selection.

Source

cytoscape.lisp (file)

Generic Function: circle OBJECT
Generic Function: (setf circle) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: circle (BREADTH-FIRST-LAYOUT breadth-first-layout)
Method: (setf circle) NEW-VALUE (BREADTH-FIRST-LAYOUT breadth-first-layout)

Put depths in concentric circles if true, put depths top down if false

Source

graph-layout.lisp (file)

Generic Function: classes OBJECT
Generic Function: (setf classes) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: classes (ELEMENT element)
Method: (setf classes) NEW-VALUE (ELEMENT element)

A list of CSS classes

Source

cytoscape.lisp (file)

Generic Function: clockwise OBJECT
Generic Function: (setf clockwise) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: clockwise (RADIAL-SLOTS radial-slots)
Method: (setf clockwise) NEW-VALUE (RADIAL-SLOTS radial-slots)

Whether the layout should go clockwise (true) or counterclockwise/anticlockwise (false)

Source

graph-layout.lisp (file)

Generic Function: cols OBJECT
Generic Function: (setf cols) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: cols (GRID-LAYOUT grid-layout)
Method: (setf cols) NEW-VALUE (GRID-LAYOUT grid-layout)

Force num of cols in the grid

Source

graph-layout.lisp (file)

Generic Function: commands OBJECT
Generic Function: (setf commands) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: commands (CONTEXT-MENU context-menu)
Method: (setf commands) NEW-VALUE (CONTEXT-MENU context-menu)

an array of commands to list in the menu or a function that returns the array

Source

context-menu.lisp (file)

Generic Function: component-spacing OBJECT
Generic Function: (setf component-spacing) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: component-spacing (COSE-LAYOUT cose-layout)
Method: (setf component-spacing) NEW-VALUE (COSE-LAYOUT cose-layout)

Extra spacing between components in non-compound graphs

Source

graph-layout.lisp (file)

Generic Function: condense OBJECT
Generic Function: (setf condense) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: condense (GRID-LAYOUT grid-layout)
Method: (setf condense) NEW-VALUE (GRID-LAYOUT grid-layout)

Uses all available space on false, uses minimal space on true

Source

graph-layout.lisp (file)

Generic Function: content OBJECT
Generic Function: (setf content) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: content (MENU-COMMAND menu-command)
Method: (setf content) NEW-VALUE (MENU-COMMAND menu-command)

HTML/text content to be displayed in the menu.

Source

context-menu.lisp (file)

Generic Function: content-style OBJECT
Generic Function: (setf content-style) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: content-style (MENU-COMMAND menu-command)
Method: (setf content-style) NEW-VALUE (MENU-COMMAND menu-command)

css key:value pairs to set the command’s css in js if you want.

Source

context-menu.lisp (file)

Generic Function: context-menus OBJECT
Generic Function: (setf context-menus) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: context-menus (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf context-menus) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

The context menus for the graph

Source

cytoscape.lisp (file)

Generic Function: convergence-threshold OBJECT
Generic Function: (setf convergence-threshold) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: convergence-threshold (COLA-LAYOUT cola-layout)
Method: (setf convergence-threshold) NEW-VALUE (COLA-LAYOUT cola-layout)

When the alpha value (system energy) falls below this value, the layout stops

Source

graph-layout.lisp (file)

Generic Function: cooling-factor OBJECT
Generic Function: (setf cooling-factor) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: cooling-factor (COSE-LAYOUT cose-layout)
Method: (setf cooling-factor) NEW-VALUE (COSE-LAYOUT cose-layout)

Cooling factor (how the temperature is reduced between consecutive iterations

Source

graph-layout.lisp (file)

Generic Function: data OBJECT
Generic Function: (setf data) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: data (ELEMENT element)
Method: (setf data) NEW-VALUE (ELEMENT element)

An alist of the properties of the element.

Source

cytoscape.lisp (file)

Generic Function: desktop-tap-threshold OBJECT
Generic Function: (setf desktop-tap-threshold) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: desktop-tap-threshold (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf desktop-tap-threshold) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

A non-negative integer that indicates the maximum allowable distance that a user may move during a tap gesture

Source

cytoscape.lisp (file)

Generic Function: directed OBJECT
Generic Function: (setf directed) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: directed (BREADTH-FIRST-LAYOUT breadth-first-layout)
Method: (setf directed) NEW-VALUE (BREADTH-FIRST-LAYOUT breadth-first-layout)

Whether the tree is directed downwards (or edges can point in any direction if false)

Source

graph-layout.lisp (file)

Generic Function: edge-elasticity OBJECT
Generic Function: (setf edge-elasticity) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: edge-elasticity (FCOSE-LAYOUT fcose-layout)
Method: (setf edge-elasticity) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

Divisor to compute edge forces

Source

graph-layout.lisp (file)

Method: edge-elasticity (COSE-LAYOUT cose-layout)
Method: (setf edge-elasticity) NEW-VALUE (COSE-LAYOUT cose-layout)

Divisor to compute edge forces. Can also be set per edge via data.

Source

graph-layout.lisp (file)

Generic Function: edge-jaccard-length OBJECT
Generic Function: (setf edge-jaccard-length) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: edge-jaccard-length (COLA-LAYOUT cola-layout)
Method: (setf edge-jaccard-length) NEW-VALUE (COLA-LAYOUT cola-layout)

Jaccard edge length in simulation. Can also be specified per edge via data.

Source

graph-layout.lisp (file)

Generic Function: edge-length OBJECT
Generic Function: (setf edge-length) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: edge-length (COLA-LAYOUT cola-layout)
Method: (setf edge-length) NEW-VALUE (COLA-LAYOUT cola-layout)

Sets edge length directly in simulation. Can also be specified per edge via data.

Source

graph-layout.lisp (file)

Generic Function: edge-sep OBJECT
Generic Function: (setf edge-sep) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: edge-sep (DAGRE-LAYOUT dagre-layout)
Method: (setf edge-sep) NEW-VALUE (DAGRE-LAYOUT dagre-layout)

the separation between adjacent edges in the same rank

Source

graph-layout.lisp (file)

Generic Function: edge-sym-diff-length OBJECT
Generic Function: (setf edge-sym-diff-length) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: edge-sym-diff-length (COLA-LAYOUT cola-layout)
Method: (setf edge-sym-diff-length) NEW-VALUE (COLA-LAYOUT cola-layout)

Symmetric diff edge length in simulation. Can also be specified per edge via data.

Source

graph-layout.lisp (file)

Generic Function: edge-weight OBJECT
Generic Function: (setf edge-weight) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: edge-weight (DAGRE-LAYOUT dagre-layout)
Method: (setf edge-weight) NEW-VALUE (DAGRE-LAYOUT dagre-layout)

Higher weight edges are generally made shorter and straighter than lower weight edges. Can also be set per edge via data.

Source

graph-layout.lisp (file)

Generic Function: elements OBJECT
Generic Function: (setf elements) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: elements (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf elements) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

The list of graph elements

Source

cytoscape.lisp (file)

Generic Function: enabled OBJECT
Generic Function: (setf enabled) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: enabled (MENU-COMMAND menu-command)
Method: (setf enabled) NEW-VALUE (MENU-COMMAND menu-command)

Whether the command is selectable.

Source

context-menu.lisp (file)

Generic Function: equidistant OBJECT
Generic Function: (setf equidistant) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: equidistant (CONCENTRIC-LAYOUT concentric-layout)
Method: (setf equidistant) NEW-VALUE (CONCENTRIC-LAYOUT concentric-layout)

Whether levels have an equal radial distance betwen them, may cause bounding box overflow

Source

graph-layout.lisp (file)

Generic Function: fill-color OBJECT
Generic Function: (setf fill-color) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: fill-color (CONTEXT-MENU context-menu)
Method: (setf fill-color) NEW-VALUE (CONTEXT-MENU context-menu)

the background colour of the menu

Source

context-menu.lisp (file)

Method: fill-color (MENU-COMMAND menu-command)
Method: (setf fill-color) NEW-VALUE (MENU-COMMAND menu-command)

Custom background color for item.

Source

context-menu.lisp (file)

Generic Function: fit OBJECT
Generic Function: (setf fit) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: fit (COMMON-SLOTS common-slots)
Method: (setf fit) NEW-VALUE (COMMON-SLOTS common-slots)

Whether to fit the viewport to the graph

Source

graph-layout.lisp (file)

Generic Function: flow OBJECT
Generic Function: (setf flow) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: flow (COLA-LAYOUT cola-layout)
Method: (setf flow) NEW-VALUE (COLA-LAYOUT cola-layout)

use DAG/tree flow layout if specified, e.g. { axis: ’y’, minSeparation: 30 }

Source

graph-layout.lisp (file)

Generic Function: gap-inequalities OBJECT
Generic Function: (setf gap-inequalities) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: gap-inequalities (COLA-LAYOUT cola-layout)
Method: (setf gap-inequalities) NEW-VALUE (COLA-LAYOUT cola-layout)

list of inequality constraints for the gap between the nodes, e.g. [{"axis":"y", "left":node1, "right":node2, "gap":25}]

Source

graph-layout.lisp (file)

Generic Function: grabbable OBJECT
Generic Function: (setf grabbable) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: grabbable (ELEMENT element)
Method: (setf grabbable) NEW-VALUE (ELEMENT element)

T if the element can be grabbed.

Source

cytoscape.lisp (file)

Generic Function: grabbed OBJECT
Generic Function: (setf grabbed) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: grabbed (ELEMENT element)
Method: (setf grabbed) NEW-VALUE (ELEMENT element)

T if if the element is currently grabbed.

Source

cytoscape.lisp (file)

Generic Function: graph-layouts OBJECT
Generic Function: (setf graph-layouts) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: graph-layouts (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf graph-layouts) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

Layout algorithms

Source

cytoscape.lisp (file)

Generic Function: graph-style OBJECT
Generic Function: (setf graph-style) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: graph-style (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf graph-style) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

The stylesheet for the graph

Source

cytoscape.lisp (file)

Generic Function: gravity OBJECT
Generic Function: (setf gravity) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: gravity (GRAVITY-SLOT gravity-slot)
Method: (setf gravity) NEW-VALUE (GRAVITY-SLOT gravity-slot)

Gravity force (constant)

Source

graph-layout.lisp (file)

Generic Function: gravity-compound OBJECT
Generic Function: (setf gravity-compound) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: gravity-compound (FCOSE-LAYOUT fcose-layout)
Method: (setf gravity-compound) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

Gravity force (constant) for compounds

Source

graph-layout.lisp (file)

Generic Function: gravity-range OBJECT
Generic Function: (setf gravity-range) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: gravity-range (FCOSE-LAYOUT fcose-layout)
Method: (setf gravity-range) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

Gravity range (constant)

Source

graph-layout.lisp (file)

Generic Function: gravity-range-compound OBJECT
Generic Function: (setf gravity-range-compound) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: gravity-range-compound (FCOSE-LAYOUT fcose-layout)
Method: (setf gravity-range-compound) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

Gravity range (constant) for compounds

Source

graph-layout.lisp (file)

Generic Function: grid OBJECT
Generic Function: (setf grid) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: grid (BREADTH-FIRST-LAYOUT breadth-first-layout)
Method: (setf grid) NEW-VALUE (BREADTH-FIRST-LAYOUT breadth-first-layout)

Whether to create an even grid into which the DAG is placed (circle:false only)

Source

graph-layout.lisp (file)

Generic Function: group OBJECT
Generic Function: (setf group) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: group (ELEMENT element)
Method: (setf group) NEW-VALUE (ELEMENT element)

Element type. Must be either nodes or edges.

Source

cytoscape.lisp (file)

Generic Function: handle-disconnected OBJECT
Generic Function: (setf handle-disconnected) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: handle-disconnected (COLA-LAYOUT cola-layout)
Method: (setf handle-disconnected) NEW-VALUE (COLA-LAYOUT cola-layout)

if true, avoids disconnected components from overlapping

Source

graph-layout.lisp (file)

Generic Function: headless OBJECT
Generic Function: (setf headless) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: headless (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf headless) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

A convenience option that initialises the instance to run headlessly.

Source

cytoscape.lisp (file)

Generic Function: hide-edges-on-viewport OBJECT
Generic Function: (setf hide-edges-on-viewport) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: hide-edges-on-viewport (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf hide-edges-on-viewport) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

A rendering hint that when set to t makes the renderer
not render edges while the viewport is being manipulated. This makes panning, zooming, dragging, et cetera more responsive for large graphs.

Source

cytoscape.lisp (file)

Generic Function: ideal-edge-length OBJECT
Generic Function: (setf ideal-edge-length) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: ideal-edge-length (FCOSE-LAYOUT fcose-layout)
Method: (setf ideal-edge-length) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

Ideal edge (non nested) length

Source

graph-layout.lisp (file)

Method: ideal-edge-length (COSE-LAYOUT cose-layout)
Method: (setf ideal-edge-length) NEW-VALUE (COSE-LAYOUT cose-layout)

Ideal edge (non nested) length. Can also be set per edge via data.

Source

graph-layout.lisp (file)

Generic Function: indicator-size OBJECT
Generic Function: (setf indicator-size) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: indicator-size (CONTEXT-MENU context-menu)
Method: (setf indicator-size) NEW-VALUE (CONTEXT-MENU context-menu)

the size in pixels of the pointer to the active command

Source

context-menu.lisp (file)

Generic Function: initial-energy-on-incremental OBJECT
Generic Function: (setf initial-energy-on-incremental) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: initial-energy-on-incremental (FCOSE-LAYOUT fcose-layout)
Method: (setf initial-energy-on-incremental) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

Initial cooling factor for incremental layout

Source

graph-layout.lisp (file)

Generic Function: initial-temp OBJECT
Generic Function: (setf initial-temp) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: initial-temp (COSE-LAYOUT cose-layout)
Method: (setf initial-temp) NEW-VALUE (COSE-LAYOUT cose-layout)

Initial temperature (maximum node displacement)

Source

graph-layout.lisp (file)

Generic Function: item-color OBJECT
Generic Function: (setf item-color) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: item-color (CONTEXT-MENU context-menu)
Method: (setf item-color) NEW-VALUE (CONTEXT-MENU context-menu)

the colour of text in the command’s content

Source

context-menu.lisp (file)

Generic Function: item-text-shadow-color OBJECT
Generic Function: (setf item-text-shadow-color) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: item-text-shadow-color (CONTEXT-MENU context-menu)
Method: (setf item-text-shadow-color) NEW-VALUE (CONTEXT-MENU context-menu)

the text shadow colour of the command’s content

Source

context-menu.lisp (file)

Generic Function: locked OBJECT
Generic Function: (setf locked) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: locked (ELEMENT element)
Method: (setf locked) NEW-VALUE (ELEMENT element)

T if the element will not be moved during a layout.

Source

cytoscape.lisp (file)

Generic Function: max-simulation-time OBJECT
Generic Function: (setf max-simulation-time) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: max-simulation-time (COLA-LAYOUT cola-layout)
Method: (setf max-simulation-time) NEW-VALUE (COLA-LAYOUT cola-layout)

max length in ms to run the layout

Source

graph-layout.lisp (file)

Generic Function: max-spotlight-radius OBJECT
Generic Function: (setf max-spotlight-radius) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: max-spotlight-radius (CONTEXT-MENU context-menu)
Method: (setf max-spotlight-radius) NEW-VALUE (CONTEXT-MENU context-menu)

the maximum radius in pixels of the spotlight

Source

context-menu.lisp (file)

Generic Function: max-zoom OBJECT
Generic Function: (setf max-zoom) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: max-zoom (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf max-zoom) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

A maximum bound on the zoom level of the graph. The viewport can not be scaled larger than this zoom level.

Source

cytoscape.lisp (file)

Generic Function: maximal OBJECT
Generic Function: (setf maximal) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: maximal (BREADTH-FIRST-LAYOUT breadth-first-layout)
Method: (setf maximal) NEW-VALUE (BREADTH-FIRST-LAYOUT breadth-first-layout)

Whether to shift nodes down their natural BFS depths in order to avoid upwards edges (DAGS only)

Source

graph-layout.lisp (file)

Generic Function: menu-radius OBJECT
Generic Function: (setf menu-radius) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: menu-radius (CONTEXT-MENU context-menu)
Method: (setf menu-radius) NEW-VALUE (CONTEXT-MENU context-menu)

the radius of the circular menu in pixels

Source

context-menu.lisp (file)

Generic Function: min-length OBJECT
Generic Function: (setf min-length) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: min-length (DAGRE-LAYOUT dagre-layout)
Method: (setf min-length) NEW-VALUE (DAGRE-LAYOUT dagre-layout)

Number of ranks to keep between the source and target of the edge. Can also be set per edge via data.

Source

graph-layout.lisp (file)

Generic Function: min-node-spacing OBJECT
Generic Function: (setf min-node-spacing) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: min-node-spacing (CONCENTRIC-LAYOUT concentric-layout)
Method: (setf min-node-spacing) NEW-VALUE (CONCENTRIC-LAYOUT concentric-layout)

Min spacing between outside of nodes (used for radius adjustment)

Source

graph-layout.lisp (file)

Generic Function: min-spotlight-radius OBJECT
Generic Function: (setf min-spotlight-radius) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: min-spotlight-radius (CONTEXT-MENU context-menu)
Method: (setf min-spotlight-radius) NEW-VALUE (CONTEXT-MENU context-menu)

the minimum radius in pixels of the spotlight

Source

context-menu.lisp (file)

Generic Function: min-temp OBJECT
Generic Function: (setf min-temp) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: min-temp (COSE-LAYOUT cose-layout)
Method: (setf min-temp) NEW-VALUE (COSE-LAYOUT cose-layout)

Lower temperature threshold (below this point the layout will end)

Source

graph-layout.lisp (file)

Generic Function: min-zoom OBJECT
Generic Function: (setf min-zoom) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: min-zoom (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf min-zoom) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

A minimum bound on the zoom level of the graph. The viewport can not be scaled smaller than this zoom level.

Source

cytoscape.lisp (file)

Generic Function: motion-blur OBJECT
Generic Function: (setf motion-blur) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: motion-blur (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf motion-blur) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

A rendering hint that when set to t makes the renderer
use a motion blur effect to make the transition between frames seem smoother.

Source

cytoscape.lisp (file)

Generic Function: motion-blur-opacity OBJECT
Generic Function: (setf motion-blur-opacity) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: motion-blur-opacity (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf motion-blur-opacity) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

When motionBlur: t, this value controls the opacity of motion blur frames.

Source

cytoscape.lisp (file)

Generic Function: nesting-factor OBJECT
Generic Function: (setf nesting-factor) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: nesting-factor (NESTING-FACTOR-SLOT nesting-factor-slot)
Method: (setf nesting-factor) NEW-VALUE (NESTING-FACTOR-SLOT nesting-factor-slot)

Nesting factor (multiplier) to compute ideal edge length for nested edges

Source

graph-layout.lisp (file)

Generic Function: node-dimensions-include-labels OBJECT
Generic Function: (setf node-dimensions-include-labels) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: node-dimensions-include-labels (NODE-DIMENSIONS-INCLUDE-LABELS-SLOT node-dimensions-include-labels-slot)
Method: (setf node-dimensions-include-labels) NEW-VALUE (NODE-DIMENSIONS-INCLUDE-LABELS-SLOT node-dimensions-include-labels-slot)

Includes the label when calculating node bounding boxes for the layout algorithm.

Source

graph-layout.lisp (file)

Generic Function: node-overlap OBJECT
Generic Function: (setf node-overlap) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: node-overlap (COSE-LAYOUT cose-layout)
Method: (setf node-overlap) NEW-VALUE (COSE-LAYOUT cose-layout)

Node repulsion (overlapping) multiplier

Source

graph-layout.lisp (file)

Generic Function: node-repulsion OBJECT
Generic Function: (setf node-repulsion) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: node-repulsion (FCOSE-LAYOUT fcose-layout)
Method: (setf node-repulsion) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

Node repulsion (non overlapping) multiplier

Source

graph-layout.lisp (file)

Method: node-repulsion (COSE-LAYOUT cose-layout)
Method: (setf node-repulsion) NEW-VALUE (COSE-LAYOUT cose-layout)

Node repulsion (non overlapping) multiplier. Can also be set per node in data.

Source

graph-layout.lisp (file)

Generic Function: node-sep OBJECT
Generic Function: (setf node-sep) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: node-sep (DAGRE-LAYOUT dagre-layout)
Method: (setf node-sep) NEW-VALUE (DAGRE-LAYOUT dagre-layout)

the separation between adjacent nodes in the same rank

Source

graph-layout.lisp (file)

Generic Function: node-separation OBJECT
Generic Function: (setf node-separation) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: node-separation (FCOSE-LAYOUT fcose-layout)
Method: (setf node-separation) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

Separation amount between nodes

Source

graph-layout.lisp (file)

Generic Function: num-iter OBJECT
Generic Function: (setf num-iter) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: num-iter (NUM-ITER-SLOT num-iter-slot)
Method: (setf num-iter) NEW-VALUE (NUM-ITER-SLOT num-iter-slot)

Maximum number of iterations to perform

Source

graph-layout.lisp (file)

Generic Function: pack-components OBJECT
Generic Function: (setf pack-components) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: pack-components (FCOSE-LAYOUT fcose-layout)
Method: (setf pack-components) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

Whether to pack disconnected components - valid only if randomize: true

Source

graph-layout.lisp (file)

Generic Function: padding OBJECT
Generic Function: (setf padding) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: padding (COMMON-SLOTS common-slots)
Method: (setf padding) NEW-VALUE (COMMON-SLOTS common-slots)

Padding to leave between graph and viewport

Source

graph-layout.lisp (file)

Generic Function: pan OBJECT
Generic Function: (setf pan) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: pan (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf pan) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

Pan location of the graph.

Source

cytoscape.lisp (file)

Method: pan (PRESET-LAYOUT preset-layout)
Method: (setf pan) NEW-VALUE (PRESET-LAYOUT preset-layout)

The pan level to set (prob want fit = false if set)

Source

graph-layout.lisp (file)

Generic Function: panning-enabled OBJECT
Generic Function: (setf panning-enabled) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: panning-enabled (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf panning-enabled) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

Whether panning the graph is enabled, both by user events sand programmatically.

Source

cytoscape.lisp (file)

Generic Function: pi-tol OBJECT
Generic Function: (setf pi-tol) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: pi-tol (FCOSE-LAYOUT fcose-layout)
Method: (setf pi-tol) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

Power iteration tolerance

Source

graph-layout.lisp (file)

Generic Function: quality OBJECT
Generic Function: (setf quality) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: quality (FCOSE-LAYOUT fcose-layout)
Method: (setf quality) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

Layout quality

Source

graph-layout.lisp (file)

Generic Function: radius OBJECT
Generic Function: (setf radius) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: radius (CIRCLE-LAYOUT circle-layout)
Method: (setf radius) NEW-VALUE (CIRCLE-LAYOUT circle-layout)

The radius of the circle

Source

graph-layout.lisp (file)

Generic Function: randomize OBJECT
Generic Function: (setf randomize) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: randomize (RANDOMIZE-SLOT randomize-slot)
Method: (setf randomize) NEW-VALUE (RANDOMIZE-SLOT randomize-slot)

Use random node positions at beginning of layout

Source

graph-layout.lisp (file)

Generic Function: rank-dir OBJECT
Generic Function: (setf rank-dir) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: rank-dir (DAGRE-LAYOUT dagre-layout)
Method: (setf rank-dir) NEW-VALUE (DAGRE-LAYOUT dagre-layout)

’TB’ for top to bottom flow, ’LR’ for left to right,

Source

graph-layout.lisp (file)

Generic Function: rank-sep OBJECT
Generic Function: (setf rank-sep) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: rank-sep (DAGRE-LAYOUT dagre-layout)
Method: (setf rank-sep) NEW-VALUE (DAGRE-LAYOUT dagre-layout)

the separation between each rank in the layout

Source

graph-layout.lisp (file)

Generic Function: ranker OBJECT
Generic Function: (setf ranker) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: ranker (DAGRE-LAYOUT dagre-layout)
Method: (setf ranker) NEW-VALUE (DAGRE-LAYOUT dagre-layout)

Type of algorithm to assign a rank to each node in the input graph. Possible values: ’network-simplex’, ’tight-tree’ or ’longest-path’

Source

graph-layout.lisp (file)

Generic Function: refresh OBJECT
Generic Function: (setf refresh) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: refresh (REFRESH-SLOT refresh-slot)
Method: (setf refresh) NEW-VALUE (REFRESH-SLOT refresh-slot)

Number of ticks per frame; higher is faster but more jerky

Source

graph-layout.lisp (file)

Generic Function: removed OBJECT
Generic Function: (setf removed) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: removed (ELEMENT element)
Method: (setf removed) NEW-VALUE (ELEMENT element)

T if the element has been removed from the graph.

Source

cytoscape.lisp (file)

Generic Function: roots OBJECT
Generic Function: (setf roots) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: roots (BREADTH-FIRST-LAYOUT breadth-first-layout)
Method: (setf roots) NEW-VALUE (BREADTH-FIRST-LAYOUT breadth-first-layout)

The roots of the trees

Source

graph-layout.lisp (file)

Generic Function: rows OBJECT
Generic Function: (setf rows) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: rows (GRID-LAYOUT grid-layout)
Method: (setf rows) NEW-VALUE (GRID-LAYOUT grid-layout)

Force num of rows in the grid

Source

graph-layout.lisp (file)

Generic Function: sample-size OBJECT
Generic Function: (setf sample-size) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: sample-size (FCOSE-LAYOUT fcose-layout)
Method: (setf sample-size) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

Sample size to construct distance matrix

Source

graph-layout.lisp (file)

Generic Function: sampling-type OBJECT
Generic Function: (setf sampling-type) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: sampling-type (FCOSE-LAYOUT fcose-layout)
Method: (setf sampling-type) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

False for random, true for greedy sampling

Source

graph-layout.lisp (file)

Generic Function: selectable OBJECT
Generic Function: (setf selectable) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: selectable (ELEMENT element)
Method: (setf selectable) NEW-VALUE (ELEMENT element)

T if the element can be selected.

Source

cytoscape.lisp (file)

Generic Function: selected OBJECT
Generic Function: (setf selected) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: selected (ELEMENT element)
Method: (setf selected) NEW-VALUE (ELEMENT element)

Whether the element is selected in the graph.

Source

cytoscape.lisp (file)

Generic Function: selection-type OBJECT
Generic Function: (setf selection-type) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: selection-type (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf selection-type) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

A string indicating the selection behaviour from user input.
For ’additive’, a new selection made by the user adds to the set of currently selected elements. For ’single’, a new selection made by the user becomes the entire set of currently selected elements (i.e. the previous elements are unselected).

Source

cytoscape.lisp (file)

Generic Function: selector OBJECT
Generic Function: (setf selector) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: selector (GRAPH-LAYOUT graph-layout)
Method: (setf selector) NEW-VALUE (GRAPH-LAYOUT graph-layout)

Elements that the layout applies to.

Source

graph-layout.lisp (file)

Method: selector (CONTEXT-MENU context-menu)
Method: (setf selector) NEW-VALUE (CONTEXT-MENU context-menu)

Elements matching this Cytoscape.js selector will trigger this menu

Source

context-menu.lisp (file)

Generic Function: separator-width OBJECT
Generic Function: (setf separator-width) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: separator-width (CONTEXT-MENU context-menu)
Method: (setf separator-width) NEW-VALUE (CONTEXT-MENU context-menu)

the empty spacing in pixels between successive commands

Source

context-menu.lisp (file)

Generic Function: spacing-factor OBJECT
Generic Function: (setf spacing-factor) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: spacing-factor (SPACING-FACTOR-SLOT spacing-factor-slot)
Method: (setf spacing-factor) NEW-VALUE (SPACING-FACTOR-SLOT spacing-factor-slot)

Applies a multiplicative factor (>0) to expand or compress the overall area that the nodes take up

Source

graph-layout.lisp (file)

Generic Function: spotlight-padding OBJECT
Generic Function: (setf spotlight-padding) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: spotlight-padding (CONTEXT-MENU context-menu)
Method: (setf spotlight-padding) NEW-VALUE (CONTEXT-MENU context-menu)

extra spacing in pixels between the element and the spotlight

Source

context-menu.lisp (file)

Generic Function: start-angle OBJECT
Generic Function: (setf start-angle) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: start-angle (RADIAL-SLOTS radial-slots)
Method: (setf start-angle) NEW-VALUE (RADIAL-SLOTS radial-slots)

Where nodes start in radians

Source

graph-layout.lisp (file)

Generic Function: style-enabled OBJECT
Generic Function: (setf style-enabled) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: style-enabled (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf style-enabled) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

A boolean that indicates whether styling should be used.
For headless (i.e. outside the browser) environments, display is not necessary and so neither is styling necessary — thereby speeding up your code.

Source

cytoscape.lisp (file)

Generic Function: sweep OBJECT
Generic Function: (setf sweep) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: sweep (RADIAL-SLOTS radial-slots)
Method: (setf sweep) NEW-VALUE (RADIAL-SLOTS radial-slots)

How many radians should be between the first and last node (defaults to full circle)

Source

graph-layout.lisp (file)

Generic Function: texture-on-viewport OBJECT
Generic Function: (setf texture-on-viewport) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: texture-on-viewport (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf texture-on-viewport) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

A rendering hint that when set to true makes the
renderer use a texture during panning and zooming instead of drawing the elements, making large graphs more responsive.

Source

cytoscape.lisp (file)

Generic Function: tile OBJECT
Generic Function: (setf tile) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: tile (FCOSE-LAYOUT fcose-layout)
Method: (setf tile) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

For enabling tiling

Source

graph-layout.lisp (file)

Generic Function: tile-padding-horizontal OBJECT
Generic Function: (setf tile-padding-horizontal) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: tile-padding-horizontal (FCOSE-LAYOUT fcose-layout)
Method: (setf tile-padding-horizontal) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

Represents the amount of the horizontal space to put between the zero degree members during the tiling operation(can also be a function)

Source

graph-layout.lisp (file)

Generic Function: tile-padding-vertical OBJECT
Generic Function: (setf tile-padding-vertical) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: tile-padding-vertical (FCOSE-LAYOUT fcose-layout)
Method: (setf tile-padding-vertical) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

Represents the amount of the vertical space to put between the zero degree members during the tiling operation(can also be a function)

Source

graph-layout.lisp (file)

Generic Function: tooltip-source OBJECT
Generic Function: (setf tooltip-source) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: tooltip-source (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf tooltip-source) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

Field name in data of the tooltips.

Source

cytoscape.lisp (file)

Generic Function: touch-tap-threshold OBJECT
Generic Function: (setf touch-tap-threshold) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: touch-tap-threshold (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf touch-tap-threshold) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

A non-negative integer that indicates the maximum allowable distance that a user may move during a tap gesture

Source

cytoscape.lisp (file)

Generic Function: unconst-iter OBJECT
Generic Function: (setf unconst-iter) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: unconst-iter (COLA-LAYOUT cola-layout)
Method: (setf unconst-iter) NEW-VALUE (COLA-LAYOUT cola-layout)

unconstrained initial layout iterations

Source

graph-layout.lisp (file)

Generic Function: ungrabify-while-simulating OBJECT
Generic Function: (setf ungrabify-while-simulating) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: ungrabify-while-simulating (COLA-LAYOUT cola-layout)
Method: (setf ungrabify-while-simulating) NEW-VALUE (COLA-LAYOUT cola-layout)

So you can’t drag nodes during layout

Source

graph-layout.lisp (file)

Generic Function: uniform-node-dimensions OBJECT
Generic Function: (setf uniform-node-dimensions) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: uniform-node-dimensions (FCOSE-LAYOUT fcose-layout)
Method: (setf uniform-node-dimensions) NEW-VALUE (FCOSE-LAYOUT fcose-layout)

Whether or not simple nodes (non-compound nodes) are of uniform dimensions

Source

graph-layout.lisp (file)

Generic Function: user-const-iter OBJECT
Generic Function: (setf user-const-iter) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: user-const-iter (COLA-LAYOUT cola-layout)
Method: (setf user-const-iter) NEW-VALUE (COLA-LAYOUT cola-layout)

initial layout iterations with user-specified constraints

Source

graph-layout.lisp (file)

Generic Function: user-panning-enabled OBJECT
Generic Function: (setf user-panning-enabled) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: user-panning-enabled (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf user-panning-enabled) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

Whether user events (e.g. dragging the graph background) are
allowed to pan the graph. Programmatic changes to pan are unaffected by this option.

Source

cytoscape.lisp (file)

Generic Function: user-zooming-enabled OBJECT
Generic Function: (setf user-zooming-enabled) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: user-zooming-enabled (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf user-zooming-enabled) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

Whether user events (e.g. mouse wheel, pinch-to-zoom) are
allowed to zoom the graph. Programmatic changes to zoom are unaffected by this option.

Source

cytoscape.lisp (file)

Generic Function: wheel-sensitivity OBJECT
Generic Function: (setf wheel-sensitivity) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: wheel-sensitivity (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf wheel-sensitivity) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

Changes the scroll wheel sensitivity when zooming.
This is a multiplicative modifier. So, a value between 0 and 1 reduces the sensitivity (zooms slower), and a value greater than 1 increases the sensitivity (zooms faster).

Source

cytoscape.lisp (file)

Generic Function: z-index OBJECT
Generic Function: (setf z-index) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: z-index (CONTEXT-MENU context-menu)
Method: (setf z-index) NEW-VALUE (CONTEXT-MENU context-menu)

the z-index of the ui div

Source

context-menu.lisp (file)

Generic Function: zoom OBJECT
Generic Function: (setf zoom) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: zoom (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf zoom) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

Zoom level of the graph.

Source

cytoscape.lisp (file)

Method: zoom (PRESET-LAYOUT preset-layout)
Method: (setf zoom) NEW-VALUE (PRESET-LAYOUT preset-layout)

The zoom level to set (prob want fit = false if set)

Source

graph-layout.lisp (file)

Generic Function: zooming-enabled OBJECT
Generic Function: (setf zooming-enabled) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: zooming-enabled (CYTOSCAPE-WIDGET cytoscape-widget)
Method: (setf zooming-enabled) NEW-VALUE (CYTOSCAPE-WIDGET cytoscape-widget)

Whether zooming the graph is enabled, both by user events and programmatically.

Source

cytoscape.lisp (file)


Previous: , Up: Exported definitions   [Contents][Index]

6.1.3 Classes

Class: breadth-first-layout ()

Breadth first graph layout algorithm.

Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses
Direct methods
  • roots (method)
  • roots (method)
  • maximal (method)
  • maximal (method)
  • grid (method)
  • grid (method)
  • directed (method)
  • directed (method)
  • circle (method)
  • circle (method)
Direct slots
Slot: circle

Put depths in concentric circles if true, put depths top down if false

Initargs

:circle

Readers

circle (generic function)

Writers

(setf circle) (generic function)

Slot: directed

Whether the tree is directed downwards (or edges can point in any direction if false)

Initargs

:directed

Readers

directed (generic function)

Writers

(setf directed) (generic function)

Slot: grid

Whether to create an even grid into which the DAG is placed (circle:false only)

Initargs

:grid

Readers

grid (generic function)

Writers

(setf grid) (generic function)

Slot: maximal

Whether to shift nodes down their natural BFS depths in order to avoid upwards edges (DAGS only)

Initargs

:maximal

Readers

maximal (generic function)

Writers

(setf maximal) (generic function)

Slot: roots

The roots of the trees

Initargs

:roots

Initform

:null

Readers

roots (generic function)

Writers

(setf roots) (generic function)

Direct Default Initargs
InitargValue
:%model-name"breadthfirstlayoutmodel"
:%view-name"breadthfirstlayoutview"
Class: circle-layout ()

Circle graph layout algorithm.

Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses
Direct methods
  • radius (method)
  • radius (method)
Direct slots
Slot: radius

The radius of the circle

Initargs

:radius

Initform

:null

Readers

radius (generic function)

Writers

(setf radius) (generic function)

Direct Default Initargs
InitargValue
:%model-name"circlelayoutmodel"
:%view-name"circlelayoutview"
Class: cola-layout ()

Cola graph layout algorithm.

Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses
Direct methods
Direct slots
Slot: alignment

Relative alignment constraints on nodes. Can also be set per node via data.

Initargs

:alignment

Initform

:null

Readers

alignment (generic function)

Writers

(setf alignment) (generic function)

Slot: all-const-iter

Initial layout iterations with all constraints including non-overlap

Initargs

:all-const-iter

Initform

:null

Readers

all-const-iter (generic function)

Writers

(setf all-const-iter) (generic function)

Slot: convergence-threshold

When the alpha value (system energy) falls below this value, the layout stops

Initargs

:convergence-threshold

Initform

0.01d0

Readers

convergence-threshold (generic function)

Writers

(setf convergence-threshold) (generic function)

Slot: edge-jaccard-length

Jaccard edge length in simulation. Can also be specified per edge via data.

Initargs

:edge-jaccard-length

Initform

:null

Readers

edge-jaccard-length (generic function)

Writers

(setf edge-jaccard-length) (generic function)

Slot: edge-length

Sets edge length directly in simulation. Can also be specified per edge via data.

Initargs

:edge-length

Initform

:null

Readers

edge-length (generic function)

Writers

(setf edge-length) (generic function)

Slot: edge-sym-diff-length

Symmetric diff edge length in simulation. Can also be specified per edge via data.

Initargs

:edge-sym-diff-length

Initform

:null

Readers

edge-sym-diff-length (generic function)

Writers

(setf edge-sym-diff-length) (generic function)

Slot: flow

use DAG/tree flow layout if specified, e.g. { axis: ’y’, minSeparation: 30 }

Initargs

:flow

Initform

:null

Readers

flow (generic function)

Writers

(setf flow) (generic function)

Slot: gap-inequalities

list of inequality constraints for the gap between the nodes, e.g. [{"axis":"y", "left":node1, "right":node2, "gap":25}]

Initargs

:gap-inequalities

Initform

:null

Readers

gap-inequalities (generic function)

Writers

(setf gap-inequalities) (generic function)

Slot: handle-disconnected

if true, avoids disconnected components from overlapping

Initargs

:handle-disconnected

Readers

handle-disconnected (generic function)

Writers

(setf handle-disconnected) (generic function)

Slot: max-simulation-time

max length in ms to run the layout

Initargs

:max-simulation-time

Initform

4000

Readers

max-simulation-time (generic function)

Writers

(setf max-simulation-time) (generic function)

Slot: unconst-iter

unconstrained initial layout iterations

Initargs

:unconst-iter

Initform

:null

Readers

unconst-iter (generic function)

Writers

(setf unconst-iter) (generic function)

Slot: ungrabify-while-simulating

So you can’t drag nodes during layout

Initargs

:ungrabify-while-simulating

Readers

ungrabify-while-simulating (generic function)

Writers

(setf ungrabify-while-simulating) (generic function)

Slot: user-const-iter

initial layout iterations with user-specified constraints

Initargs

:user-const-iter

Initform

:null

Readers

user-const-iter (generic function)

Writers

(setf user-const-iter) (generic function)

Direct Default Initargs
InitargValue
:%model-name"colalayoutmodel"
:%view-name"colalayoutview"
Class: concentric-layout ()

Concentric graph layout algorithm.

Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses
Direct methods
Direct slots
Slot: equidistant

Whether levels have an equal radial distance betwen them, may cause bounding box overflow

Initargs

:equidistant

Readers

equidistant (generic function)

Writers

(setf equidistant) (generic function)

Slot: min-node-spacing

Min spacing between outside of nodes (used for radius adjustment)

Initargs

:min-node-spacing

Initform

10

Readers

min-node-spacing (generic function)

Writers

(setf min-node-spacing) (generic function)

Direct Default Initargs
InitargValue
:%model-name"concentriclayoutmodel"
:%view-name"concentriclayoutview"
Class: context-menu ()

Context menu for cytoscape.

Package

cytoscape

Source

context-menu.lisp (file)

Direct superclasses

widget (class)

Direct methods
Direct slots
Slot: menu-radius

the radius of the circular menu in pixels

Initargs

:menu-radius

Initform

100

Readers

menu-radius (generic function)

Writers

(setf menu-radius) (generic function)

Slot: selector

Elements matching this Cytoscape.js selector will trigger this menu

Initargs

:selector

Initform

"node"

Readers

selector (generic function)

Writers

(setf selector) (generic function)

Slot: commands

an array of commands to list in the menu or a function that returns the array

Initargs

:commands

Readers

commands (generic function)

Writers

(setf commands) (generic function)

Slot: fill-color

the background colour of the menu

Initargs

:fill-color

Initform

"rgba(0, 0, 0, 0.75)"

Readers

fill-color (generic function)

Writers

(setf fill-color) (generic function)

Slot: active-fill-color

the colour used to indicate the selected command

Initargs

:active-fill-color

Initform

"rgba(1, 105, 217, 0.75)"

Readers

active-fill-color (generic function)

Writers

(setf active-fill-color) (generic function)

Slot: active-padding

additional size in pixels for the active command

Initargs

:active-padding

Initform

20

Readers

active-padding (generic function)

Writers

(setf active-padding) (generic function)

Slot: indicator-size

the size in pixels of the pointer to the active command

Initargs

:indicator-size

Initform

24

Readers

indicator-size (generic function)

Writers

(setf indicator-size) (generic function)

Slot: separator-width

the empty spacing in pixels between successive commands

Initargs

:separator-width

Initform

3

Readers

separator-width (generic function)

Writers

(setf separator-width) (generic function)

Slot: spotlight-padding

extra spacing in pixels between the element and the spotlight

Initargs

:spotlight-padding

Initform

4

Readers

spotlight-padding (generic function)

Writers

(setf spotlight-padding) (generic function)

Slot: min-spotlight-radius

the minimum radius in pixels of the spotlight

Initargs

:min-spotlight-radius

Initform

24

Readers

min-spotlight-radius (generic function)

Writers

(setf min-spotlight-radius) (generic function)

Slot: max-spotlight-radius

the maximum radius in pixels of the spotlight

Initargs

:max-spotlight-radius

Initform

38

Readers

max-spotlight-radius (generic function)

Writers

(setf max-spotlight-radius) (generic function)

Slot: open-menu-events

space-separated cytoscape events that will open the menu; only ‘cxttapstart‘ and/or ‘taphold‘ work here

Initargs

:open-menu-events

Initform

"cxttapstart taphold"

Readers

open-menu-events (generic function)

Writers

(setf open-menu-events) (generic function)

Slot: item-color

the colour of text in the command’s content

Initargs

:item-color

Initform

"white"

Readers

item-color (generic function)

Writers

(setf item-color) (generic function)

Slot: item-text-shadow-color

the text shadow colour of the command’s content

Initargs

:item-text-shadow-color

Initform

"transparent"

Readers

item-text-shadow-color (generic function)

Writers

(setf item-text-shadow-color) (generic function)

Slot: z-index

the z-index of the ui div

Initargs

:z-index

Initform

9999

Readers

z-index (generic function)

Writers

(setf z-index) (generic function)

Slot: at-mouse

draw menu at mouse position

Initargs

:at-mouse

Readers

at-mouse (generic function)

Writers

(setf at-mouse) (generic function)

Direct Default Initargs
InitargValue
:%model-name"contextmenumodel"
:%model-modulecytoscape::+module-name+
:%model-module-versioncytoscape::+module-version+
:%view-name"contextmenuview"
:%view-modulecytoscape::+module-name+
:%view-module-versioncytoscape::+module-version+
Class: cose-layout ()

Cose graph layout algorithm.

Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses
Direct methods
Direct slots
Slot: component-spacing

Extra spacing between components in non-compound graphs

Initargs

:component-spacing

Initform

40

Readers

component-spacing (generic function)

Writers

(setf component-spacing) (generic function)

Slot: cooling-factor

Cooling factor (how the temperature is reduced between consecutive iterations

Initargs

:cooling-factor

Initform

0.99d0

Readers

cooling-factor (generic function)

Writers

(setf cooling-factor) (generic function)

Slot: edge-elasticity

Divisor to compute edge forces. Can also be set per edge via data.

Initargs

:edge-elasticity

Initform

32

Readers

edge-elasticity (generic function)

Writers

(setf edge-elasticity) (generic function)

Slot: ideal-edge-length

Ideal edge (non nested) length. Can also be set per edge via data.

Initargs

:ideal-edge-length

Initform

32

Readers

ideal-edge-length (generic function)

Writers

(setf ideal-edge-length) (generic function)

Slot: initial-temp

Initial temperature (maximum node displacement)

Initargs

:initial-temp

Initform

1000.0d0

Readers

initial-temp (generic function)

Writers

(setf initial-temp) (generic function)

Slot: min-temp

Lower temperature threshold (below this point the layout will end)

Initargs

:min-temp

Initform

1.0d0

Readers

min-temp (generic function)

Writers

(setf min-temp) (generic function)

Slot: node-overlap

Node repulsion (overlapping) multiplier

Initargs

:node-overlap

Initform

4

Readers

node-overlap (generic function)

Writers

(setf node-overlap) (generic function)

Slot: node-repulsion

Node repulsion (non overlapping) multiplier. Can also be set per node in data.

Initargs

:node-repulsion

Initform

2048

Readers

node-repulsion (generic function)

Writers

(setf node-repulsion) (generic function)

Direct Default Initargs
InitargValue
:%model-name"coselayoutmodel"
:%view-name"coselayoutview"
:refresh10
Class: cytoscape-widget ()
Package

cytoscape

Source

cytoscape.lisp (file)

Direct superclasses

dom-widget (class)

Direct methods
Direct slots
Slot: min-zoom

A minimum bound on the zoom level of the graph. The viewport can not be scaled smaller than this zoom level.

Initargs

:min-zoom

Initform

1.0d-50

Readers

min-zoom (generic function)

Writers

(setf min-zoom) (generic function)

Slot: max-zoom

A maximum bound on the zoom level of the graph. The viewport can not be scaled larger than this zoom level.

Initargs

:max-zoom

Initform

1.0d50

Readers

max-zoom (generic function)

Writers

(setf max-zoom) (generic function)

Slot: zooming-enabled

Whether zooming the graph is enabled, both by user events and programmatically.

Initargs

:zooming-enabled

Initform

t

Readers

zooming-enabled (generic function)

Writers

(setf zooming-enabled) (generic function)

Slot: user-zooming-enabled

Whether user events (e.g. mouse wheel, pinch-to-zoom) are
allowed to zoom the graph. Programmatic changes to zoom are unaffected by this option.

Initargs

:user-zooming-enabled

Initform

t

Readers

user-zooming-enabled (generic function)

Writers

(setf user-zooming-enabled) (generic function)

Slot: panning-enabled

Whether panning the graph is enabled, both by user events sand programmatically.

Initargs

:panning-enabled

Initform

t

Readers

panning-enabled (generic function)

Writers

(setf panning-enabled) (generic function)

Slot: user-panning-enabled

Whether user events (e.g. dragging the graph background) are
allowed to pan the graph. Programmatic changes to pan are unaffected by this option.

Initargs

:panning-enabled

Initform

t

Readers

user-panning-enabled (generic function)

Writers

(setf user-panning-enabled) (generic function)

Slot: box-selection-enabled

Whether box selection (i.e. drag a box overlay around, and
release it to select) is enabled. If enabled while panning is also enabled, the user must use a modifier key (shift, alt, control, or command) to use box selection.

Initargs

:box-selection-enabled

Initform

t

Readers

box-selection-enabled (generic function)

Writers

(setf box-selection-enabled) (generic function)

Slot: selection-type

A string indicating the selection behaviour from user input.
For ’additive’, a new selection made by the user adds to the set of currently selected elements. For ’single’, a new selection made by the user becomes the entire set of currently selected elements (i.e. the previous elements are unselected).

Initargs

:selection-type

Initform

"single"

Readers

selection-type (generic function)

Writers

(setf selection-type) (generic function)

Slot: touch-tap-threshold

A non-negative integer that indicates the maximum allowable distance that a user may move during a tap gesture

Initargs

:touch-tap-threshold

Initform

8

Readers

touch-tap-threshold (generic function)

Writers

(setf touch-tap-threshold) (generic function)

Slot: desktop-tap-threshold

A non-negative integer that indicates the maximum allowable distance that a user may move during a tap gesture

Initargs

:desktop-tap-threshold

Initform

4

Readers

desktop-tap-threshold (generic function)

Writers

(setf desktop-tap-threshold) (generic function)

Slot: autolock

Whether nodes should be locked (not draggable at all) by default (if true, overrides individual node state).

Initargs

:autolock

Readers

autolock (generic function)

Writers

(setf autolock) (generic function)

Slot: auto-ungrabify

Whether nodes should be ungrabified (not grabbable by user) by default (if true, overrides individual node state).

Initargs

:auto-ungrabify

Readers

auto-ungrabify (generic function)

Writers

(setf auto-ungrabify) (generic function)

Slot: auto-unselectify

Whether nodes should be unselectified (immutable selection state) by default (if true, overrides individual element state).

Initargs

:auto-unselectify

Readers

auto-unselectify (generic function)

Writers

(setf auto-unselectify) (generic function)

Slot: headless

A convenience option that initialises the instance to run headlessly.

Initargs

:headless

Readers

headless (generic function)

Writers

(setf headless) (generic function)

Slot: style-enabled

A boolean that indicates whether styling should be used.
For headless (i.e. outside the browser) environments, display is not necessary and so neither is styling necessary — thereby speeding up your code.

Initargs

:style-enabled

Initform

t

Readers

style-enabled (generic function)

Writers

(setf style-enabled) (generic function)

Slot: hide-edges-on-viewport

A rendering hint that when set to t makes the renderer
not render edges while the viewport is being manipulated. This makes panning, zooming, dragging, et cetera more responsive for large graphs.

Initargs

:hide-edges-on-viewport

Readers

hide-edges-on-viewport (generic function)

Writers

(setf hide-edges-on-viewport) (generic function)

Slot: texture-on-viewport

A rendering hint that when set to true makes the
renderer use a texture during panning and zooming instead of drawing the elements, making large graphs more responsive.

Initargs

:texture-on-viewport

Readers

texture-on-viewport (generic function)

Writers

(setf texture-on-viewport) (generic function)

Slot: motion-blur

A rendering hint that when set to t makes the renderer
use a motion blur effect to make the transition between frames seem smoother.

Initargs

:motion-blur

Readers

motion-blur (generic function)

Writers

(setf motion-blur) (generic function)

Slot: motion-blur-opacity

When motionBlur: t, this value controls the opacity of motion blur frames.

Initargs

:motion-blur-opacity

Initform

0.2

Readers

motion-blur-opacity (generic function)

Writers

(setf motion-blur-opacity) (generic function)

Slot: wheel-sensitivity

Changes the scroll wheel sensitivity when zooming.
This is a multiplicative modifier. So, a value between 0 and 1 reduces the sensitivity (zooms slower), and a value greater than 1 increases the sensitivity (zooms faster).

Initargs

:wheel-sensitivity

Initform

1.0

Readers

wheel-sensitivity (generic function)

Writers

(setf wheel-sensitivity) (generic function)

Slot: graph-layouts

Layout algorithms

Initargs

:graph-layouts

Readers

graph-layouts (generic function)

Writers

(setf graph-layouts) (generic function)

Slot: graph-style

The stylesheet for the graph

Initargs

:graph-style

Readers

graph-style (generic function)

Writers

(setf graph-style) (generic function)

Slot: pan

Pan location of the graph.

Initargs

:pan

Initform

(list (cons :x 0) (cons :y 0))

Readers

pan (generic function)

Writers

(setf pan) (generic function)

Slot: zoom

Zoom level of the graph.

Initargs

:zoom

Initform

1.0

Readers

zoom (generic function)

Writers

(setf zoom) (generic function)

Slot: tooltip-source

Field name in data of the tooltips.

Initargs

:tooltip-source

Initform

"tooltip"

Readers

tooltip-source (generic function)

Writers

(setf tooltip-source) (generic function)

Slot: elements

The list of graph elements

Initargs

:elements

Readers

elements (generic function)

Writers

(setf elements) (generic function)

Slot: context-menus

The context menus for the graph

Initargs

:context-menus

Readers

context-menus (generic function)

Writers

(setf context-menus) (generic function)

Direct Default Initargs
InitargValue
:%model-name"cytoscapemodel"
:%model-modulecytoscape::+module-name+
:%model-module-versioncytoscape::+module-version+
:%view-name"cytoscapeview"
:%view-modulecytoscape::+module-name+
:%view-module-versioncytoscape::+module-version+
Class: dagre-layout ()

Dagre graph layout algorithm.

Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses
Direct methods
Direct slots
Slot: edge-sep

the separation between adjacent edges in the same rank

Initargs

:edge-sep

Initform

:null

Readers

edge-sep (generic function)

Writers

(setf edge-sep) (generic function)

Slot: edge-weight

Higher weight edges are generally made shorter and straighter than lower weight edges. Can also be set per edge via data.

Initargs

:edge-weight

Initform

1

Readers

edge-weight (generic function)

Writers

(setf edge-weight) (generic function)

Slot: min-length

Number of ranks to keep between the source and target of the edge. Can also be set per edge via data.

Initargs

:min-length

Initform

1

Readers

min-length (generic function)

Writers

(setf min-length) (generic function)

Slot: node-sep

the separation between adjacent nodes in the same rank

Initargs

:node-sep

Initform

:null

Readers

node-sep (generic function)

Writers

(setf node-sep) (generic function)

Slot: rank-dir

’TB’ for top to bottom flow, ’LR’ for left to right,

Initargs

:rank-dir

Initform

:null

Readers

rank-dir (generic function)

Writers

(setf rank-dir) (generic function)

Slot: ranker

Type of algorithm to assign a rank to each node in the input graph. Possible values: ’network-simplex’, ’tight-tree’ or ’longest-path’

Initargs

:ranker

Initform

:null

Readers

ranker (generic function)

Writers

(setf ranker) (generic function)

Slot: rank-sep

the separation between each rank in the layout

Initargs

:rank-sep

Initform

:null

Readers

rank-sep (generic function)

Writers

(setf rank-sep) (generic function)

Direct Default Initargs
InitargValue
:%model-name"dagrelayoutmodel"
:%view-name"dagrelayoutview"
Class: element ()

A node or an edge in a graph.

Package

cytoscape

Source

cytoscape.lisp (file)

Direct superclasses

widget (class)

Direct methods
Direct slots
Slot: group

Element type. Must be either nodes or edges.

Initargs

:group

Initform

"nodes"

Readers

group (generic function)

Writers

(setf group) (generic function)

Slot: removed

T if the element has been removed from the graph.

Initargs

:removed

Readers

removed (generic function)

Writers

(setf removed) (generic function)

Slot: selected

Whether the element is selected in the graph.

Initargs

:selected

Readers

selected (generic function)

Writers

(setf selected) (generic function)

Slot: selectable

T if the element can be selected.

Initargs

:selectable

Initform

t

Readers

selectable (generic function)

Writers

(setf selectable) (generic function)

Slot: locked

T if the element will not be moved during a layout.

Initargs

:locked

Readers

locked (generic function)

Writers

(setf locked) (generic function)

Slot: grabbed

T if if the element is currently grabbed.

Initargs

:grabbed

Readers

grabbed (generic function)

Writers

(setf grabbed) (generic function)

Slot: grabbable

T if the element can be grabbed.

Initargs

:grabbable

Initform

t

Readers

grabbable (generic function)

Writers

(setf grabbable) (generic function)

Slot: classes

A list of CSS classes

Initargs

:classes

Readers

classes (generic function)

Writers

(setf classes) (generic function)

Slot: data

An alist of the properties of the element.

Initargs

:data

Readers

data (generic function)

Writers

(setf data) (generic function)

Slot: position

The position of the element.

Initargs

:position

Readers

%position (generic function)

Writers

(setf %position) (generic function)

Direct Default Initargs
InitargValue
:%model-name"elementmodel"
:%model-modulecytoscape::+module-name+
:%model-module-versioncytoscape::+module-version+
:%view-name"elementview"
:%view-modulecytoscape::+module-name+
:%view-module-versioncytoscape::+module-version+
Class: fcose-layout ()

fCoSE graph layout algorithm.

Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses
Direct methods
Direct slots
Slot: quality

Layout quality

Initargs

:quality

Initform

"default"

Readers

quality (generic function)

Writers

(setf quality) (generic function)

Slot: uniform-node-dimensions

Whether or not simple nodes (non-compound nodes) are of uniform dimensions

Initargs

:uniform-node-dimensions

Readers

uniform-node-dimensions (generic function)

Writers

(setf uniform-node-dimensions) (generic function)

Slot: pack-components

Whether to pack disconnected components - valid only if randomize: true

Initargs

:pack-components

Initform

t

Readers

pack-components (generic function)

Writers

(setf pack-components) (generic function)

Slot: sampling-type

False for random, true for greedy sampling

Initargs

:sampling-type

Initform

t

Readers

sampling-type (generic function)

Writers

(setf sampling-type) (generic function)

Slot: sample-size

Sample size to construct distance matrix

Initargs

:sample-size

Initform

25

Readers

sample-size (generic function)

Writers

(setf sample-size) (generic function)

Slot: node-separation

Separation amount between nodes

Initargs

:node-separation

Initform

75

Readers

node-separation (generic function)

Writers

(setf node-separation) (generic function)

Slot: pi-tol

Power iteration tolerance

Initargs

:pi-tol

Initform

1.0e-7

Readers

pi-tol (generic function)

Writers

(setf pi-tol) (generic function)

Slot: node-repulsion

Node repulsion (non overlapping) multiplier

Initargs

:node-repulsion

Initform

4500

Readers

node-repulsion (generic function)

Writers

(setf node-repulsion) (generic function)

Slot: ideal-edge-length

Ideal edge (non nested) length

Initargs

:ideal-edge-length

Initform

50

Readers

ideal-edge-length (generic function)

Writers

(setf ideal-edge-length) (generic function)

Slot: edge-elasticity

Divisor to compute edge forces

Initargs

:edge-elasticity

Initform

0.45

Readers

edge-elasticity (generic function)

Writers

(setf edge-elasticity) (generic function)

Slot: tile

For enabling tiling

Initargs

:tile

Initform

t

Readers

tile (generic function)

Writers

(setf tile) (generic function)

Slot: tile-padding-vertical

Represents the amount of the vertical space to put between the zero degree members during the tiling operation(can also be a function)

Initargs

:tile-padding-vertical

Initform

10

Readers

tile-padding-vertical (generic function)

Writers

(setf tile-padding-vertical) (generic function)

Slot: tile-padding-horizontal

Represents the amount of the horizontal space to put between the zero degree members during the tiling operation(can also be a function)

Initargs

:tile-padding-horizontal

Initform

10

Readers

tile-padding-horizontal (generic function)

Writers

(setf tile-padding-horizontal) (generic function)

Slot: gravity-range-compound

Gravity range (constant) for compounds

Initargs

:gravity-range-compound

Initform

1.5d0

Readers

gravity-range-compound (generic function)

Writers

(setf gravity-range-compound) (generic function)

Slot: gravity-range

Gravity range (constant)

Initargs

:gravity-range

Initform

3.8d0

Readers

gravity-range (generic function)

Writers

(setf gravity-range) (generic function)

Slot: gravity-compound

Gravity force (constant) for compounds

Initargs

:gravity-compound

Initform

1.0d0

Readers

gravity-compound (generic function)

Writers

(setf gravity-compound) (generic function)

Slot: initial-energy-on-incremental

Initial cooling factor for incremental layout

Initargs

:initial-energy-on-incremental

Initform

0.3d0

Readers

initial-energy-on-incremental (generic function)

Writers

(setf initial-energy-on-incremental) (generic function)

Direct Default Initargs
InitargValue
:%model-name"fcose_layoutmodel"
:%view-name"fcose_layoutview"
:nesting-factor0.1d0
:num-iter2500
:gravity0.25d0
:randomizet
Class: graph-layout ()

Graph layout algorithm.

Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses

widget (class)

Direct subclasses
Direct methods
Direct slots
Slot: selector

Elements that the layout applies to.

Initargs

:selector

Initform

"*"

Readers

selector (generic function)

Writers

(setf selector) (generic function)

Slot: on-layout-stop
Initargs

:on-layout-stop

Readers

%on-layout-stop (generic function)

Writers

(setf %on-layout-stop) (generic function)

Direct Default Initargs
InitargValue
:%model-name"graphlayoutmodel"
:%model-modulecytoscape::+module-name+
:%model-module-versioncytoscape::+module-version+
:%view-name"graphlayoutview"
:%view-modulecytoscape::+module-name+
:%view-module-versioncytoscape::+module-version+
Class: grid-layout ()

Grid graph layout algorithm.

Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses
Direct methods
Direct slots
Slot: avoid-overlap-padding

Extra spacing around nodes when avoidOverlap: true

Initargs

:avoid-overlap-padding

Initform

10

Readers

avoid-overlap-padding (generic function)

Writers

(setf avoid-overlap-padding) (generic function)

Slot: cols

Force num of cols in the grid

Initargs

:cols

Initform

:null

Readers

cols (generic function)

Writers

(setf cols) (generic function)

Slot: condense

Uses all available space on false, uses minimal space on true

Initargs

:condense

Readers

condense (generic function)

Writers

(setf condense) (generic function)

Slot: rows

Force num of rows in the grid

Initargs

:rows

Initform

:null

Readers

rows (generic function)

Writers

(setf rows) (generic function)

Direct Default Initargs
InitargValue
:%model-name"gridlayoutmodel"
:%view-name"gridlayoutview"
Class: menu-command ()

Menu commands and selection handlers for context menus.

Package

cytoscape

Source

context-menu.lisp (file)

Direct superclasses

widget (class)

Direct methods
Direct slots
Slot: fill-color

Custom background color for item.

Initargs

:fill-color

Readers

fill-color (generic function)

Writers

(setf fill-color) (generic function)

Slot: content

HTML/text content to be displayed in the menu.

Initargs

:content

Initform

""

Readers

content (generic function)

Writers

(setf content) (generic function)

Slot: content-style

css key:value pairs to set the command’s css in js if you want.

Initargs

:content-style

Readers

content-style (generic function)

Writers

(setf content-style) (generic function)

Slot: enabled

Whether the command is selectable.

Initargs

:enabled

Initform

t

Readers

enabled (generic function)

Writers

(setf enabled) (generic function)

Slot: on-select

Selection handlers

Initargs

:on-select

Readers

on-select (generic function)

Writers

(setf on-select) (generic function)

Direct Default Initargs
InitargValue
:%model-name"menucommandmodel"
:%model-modulecytoscape::+module-name+
:%model-module-versioncytoscape::+module-version+
:%view-name"menucommandview"
:%view-modulecytoscape::+module-name+
:%view-module-versioncytoscape::+module-version+
Class: null-layout ()

Null graph layout algorithm.

Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses

graph-layout (class)

Direct Default Initargs
InitargValue
:%model-name"nulllayoutmodel"
:%view-name"nulllayoutview"
Class: preset-layout ()

Preset graph layout algorithm.

Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses
Direct methods
  • zoom (method)
  • zoom (method)
  • pan (method)
  • pan (method)
Direct slots
Slot: pan

The pan level to set (prob want fit = false if set)

Initargs

:pan

Initform

:null

Readers

pan (generic function)

Writers

(setf pan) (generic function)

Slot: zoom

The zoom level to set (prob want fit = false if set)

Initargs

:zoom

Initform

:null

Readers

zoom (generic function)

Writers

(setf zoom) (generic function)

Direct Default Initargs
InitargValue
:%model-name"presetlayoutmodel"
:%view-name"presetlayoutview"
Class: random-layout ()

Random graph layout algorithm.

Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses
Direct Default Initargs
InitargValue
:%model-name"randomlayoutmodel"
:%view-name"randomlayoutview"

Previous: , Up: Definitions   [Contents][Index]

6.2 Internal definitions


Next: , Previous: , Up: Internal definitions   [Contents][Index]

6.2.1 Special variables

Special Variable: +module-name+
Package

cytoscape

Source

version.lisp (file)

Special Variable: +module-version+
Package

cytoscape

Source

version.lisp (file)


Next: , Previous: , Up: Internal definitions   [Contents][Index]

6.2.2 Generic functions

Generic Function: %position OBJECT
Generic Function: (setf %position) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: %position (ELEMENT element)
Method: (setf %position) NEW-VALUE (ELEMENT element)

The position of the element.

Source

cytoscape.lisp (file)

Generic Function: on-select OBJECT
Generic Function: (setf on-select) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: on-select (MENU-COMMAND menu-command)
Method: (setf on-select) NEW-VALUE (MENU-COMMAND menu-command)

Selection handlers

Source

context-menu.lisp (file)

Generic Function: open-menu-events OBJECT
Generic Function: (setf open-menu-events) NEW-VALUE OBJECT
Package

cytoscape

Methods
Method: open-menu-events (CONTEXT-MENU context-menu)
Method: (setf open-menu-events) NEW-VALUE (CONTEXT-MENU context-menu)

space-separated cytoscape events that will open the menu; only ‘cxttapstart‘ and/or ‘taphold‘ work here

Source

context-menu.lisp (file)


Previous: , Up: Internal definitions   [Contents][Index]

6.2.3 Classes

Class: animation-slots ()
Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses

standard-object (class)

Direct subclasses
Direct methods
Direct slots
Slot: animation-duration

Duration of animation in ms, if enabled

Initargs

:animation-duration

Initform

250

Readers

animation-duration (generic function)

Writers

(setf animation-duration) (generic function)

Slot: animation-easing

Easing of animation, if enabled

Initargs

:animation-easing

Initform

:null

Readers

animation-easing (generic function)

Writers

(setf animation-easing) (generic function)

Class: avoid-overlap-slot ()
Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses

standard-object (class)

Direct subclasses
Direct methods
Direct slots
Slot: avoid-overlap

Prevents node overlap, may overflow boundingBox if not enough space

Initargs

:avoid-overlap

Initform

t

Readers

avoid-overlap (generic function)

Writers

(setf avoid-overlap) (generic function)

Class: bounding-box-slot ()
Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses

standard-object (class)

Direct subclasses
Direct methods
Direct slots
Slot: bounding-box

constrain layout bounds; { x1, y1, x2, y2 } or { x1, y1, w, h }

Initargs

:bounding-box

Initform

:null

Readers

bounding-box (generic function)

Writers

(setf bounding-box) (generic function)

Class: common-slots ()
Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses

standard-object (class)

Direct subclasses
Direct methods
  • padding (method)
  • padding (method)
  • fit (method)
  • fit (method)
  • animate (method)
  • animate (method)
Direct slots
Slot: animate

Whether to animate changes to the layout

Initargs

:animate

Initform

t

Readers

animate (generic function)

Writers

(setf animate) (generic function)

Slot: fit

Whether to fit the viewport to the graph

Initargs

:fit

Initform

t

Readers

fit (generic function)

Writers

(setf fit) (generic function)

Slot: padding

Padding to leave between graph and viewport

Initargs

:padding

Initform

30

Readers

padding (generic function)

Writers

(setf padding) (generic function)

Class: gravity-slot ()
Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses

standard-object (class)

Direct subclasses
Direct methods
  • gravity (method)
  • gravity (method)
Direct slots
Slot: gravity

Gravity force (constant)

Initargs

:gravity

Initform

1

Readers

gravity (generic function)

Writers

(setf gravity) (generic function)

Class: nesting-factor-slot ()
Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses

standard-object (class)

Direct subclasses
Direct methods
Direct slots
Slot: nesting-factor

Nesting factor (multiplier) to compute ideal edge length for nested edges

Initargs

:nesting-factor

Initform

1.2d0

Readers

nesting-factor (generic function)

Writers

(setf nesting-factor) (generic function)

Class: node-dimensions-include-labels-slot ()
Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses

standard-object (class)

Direct subclasses
Direct methods
Direct slots
Slot: node-dimensions-include-labels

Includes the label when calculating node bounding boxes for the layout algorithm.

Initargs

:node-dimensions-include-labels

Readers

node-dimensions-include-labels (generic function)

Writers

(setf node-dimensions-include-labels) (generic function)

Class: num-iter-slot ()
Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses

standard-object (class)

Direct subclasses
Direct methods
Direct slots
Slot: num-iter

Maximum number of iterations to perform

Initargs

:num-iter

Initform

1000

Readers

num-iter (generic function)

Writers

(setf num-iter) (generic function)

Class: radial-slots ()
Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses

standard-object (class)

Direct subclasses
Direct methods
Direct slots
Slot: clockwise

Whether the layout should go clockwise (true) or counterclockwise/anticlockwise (false)

Initargs

:clockwise

Initform

t

Readers

clockwise (generic function)

Writers

(setf clockwise) (generic function)

Slot: start-angle

Where nodes start in radians

Initargs

:start-angle

Initform

(* 3/2 pi)

Readers

start-angle (generic function)

Writers

(setf start-angle) (generic function)

Slot: sweep

How many radians should be between the first and last node (defaults to full circle)

Initargs

:sweep

Initform

:null

Readers

sweep (generic function)

Writers

(setf sweep) (generic function)

Class: randomize-slot ()
Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses

standard-object (class)

Direct subclasses
Direct methods
Direct slots
Slot: randomize

Use random node positions at beginning of layout

Initargs

:randomize

Readers

randomize (generic function)

Writers

(setf randomize) (generic function)

Class: refresh-slot ()
Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses

standard-object (class)

Direct subclasses
Direct methods
  • refresh (method)
  • refresh (method)
Direct slots
Slot: refresh

Number of ticks per frame; higher is faster but more jerky

Initargs

:refresh

Initform

1

Readers

refresh (generic function)

Writers

(setf refresh) (generic function)

Class: spacing-factor-slot ()
Package

cytoscape

Source

graph-layout.lisp (file)

Direct superclasses

standard-object (class)

Direct subclasses
Direct methods
Direct slots
Slot: spacing-factor

Applies a multiplicative factor (>0) to expand or compress the overall area that the nodes take up

Initargs

:spacing-factor

Initform

:null

Readers

spacing-factor (generic function)

Writers

(setf spacing-factor) (generic function)


Previous: , Up: Top   [Contents][Index]

Appendix A Indexes


Next: , Previous: , Up: Indexes   [Contents][Index]

A.1 Concepts

Jump to:   C   F   L   M  
Index Entry  Section

C
cytoscape-clj.asd: The cytoscape-clj․asd file
cytoscape-clj/src: The cytoscape-clj/src module
cytoscape-clj/src/context-menu.lisp: The cytoscape-clj/src/context-menu․lisp file
cytoscape-clj/src/cytoscape.lisp: The cytoscape-clj/src/cytoscape․lisp file
cytoscape-clj/src/graph-layout.lisp: The cytoscape-clj/src/graph-layout․lisp file
cytoscape-clj/src/packages.lisp: The cytoscape-clj/src/packages․lisp file
cytoscape-clj/src/version.lisp: The cytoscape-clj/src/version․lisp file

F
File, Lisp, cytoscape-clj.asd: The cytoscape-clj․asd file
File, Lisp, cytoscape-clj/src/context-menu.lisp: The cytoscape-clj/src/context-menu․lisp file
File, Lisp, cytoscape-clj/src/cytoscape.lisp: The cytoscape-clj/src/cytoscape․lisp file
File, Lisp, cytoscape-clj/src/graph-layout.lisp: The cytoscape-clj/src/graph-layout․lisp file
File, Lisp, cytoscape-clj/src/packages.lisp: The cytoscape-clj/src/packages․lisp file
File, Lisp, cytoscape-clj/src/version.lisp: The cytoscape-clj/src/version․lisp file

L
Lisp File, cytoscape-clj.asd: The cytoscape-clj․asd file
Lisp File, cytoscape-clj/src/context-menu.lisp: The cytoscape-clj/src/context-menu․lisp file
Lisp File, cytoscape-clj/src/cytoscape.lisp: The cytoscape-clj/src/cytoscape․lisp file
Lisp File, cytoscape-clj/src/graph-layout.lisp: The cytoscape-clj/src/graph-layout․lisp file
Lisp File, cytoscape-clj/src/packages.lisp: The cytoscape-clj/src/packages․lisp file
Lisp File, cytoscape-clj/src/version.lisp: The cytoscape-clj/src/version․lisp file

M
Module, cytoscape-clj/src: The cytoscape-clj/src module

Jump to:   C   F   L   M  

Next: , Previous: , Up: Indexes   [Contents][Index]

A.2 Functions

Jump to:   %   (  
A   B   C   D   E   F   G   H   I   L   M   N   O   P   Q   R   S   T   U   W   Z  
Index Entry  Section

%
%on-layout-stop: Exported generic functions
%on-layout-stop: Exported generic functions
%position: Internal generic functions
%position: Internal generic functions

(
(setf %on-layout-stop): Exported generic functions
(setf %on-layout-stop): Exported generic functions
(setf %position): Internal generic functions
(setf %position): Internal generic functions
(setf active-fill-color): Exported generic functions
(setf active-fill-color): Exported generic functions
(setf active-padding): Exported generic functions
(setf active-padding): Exported generic functions
(setf alignment): Exported generic functions
(setf alignment): Exported generic functions
(setf all-const-iter): Exported generic functions
(setf all-const-iter): Exported generic functions
(setf animate): Exported generic functions
(setf animate): Exported generic functions
(setf animation-duration): Exported generic functions
(setf animation-duration): Exported generic functions
(setf animation-easing): Exported generic functions
(setf animation-easing): Exported generic functions
(setf at-mouse): Exported generic functions
(setf at-mouse): Exported generic functions
(setf auto-ungrabify): Exported generic functions
(setf auto-ungrabify): Exported generic functions
(setf auto-unselectify): Exported generic functions
(setf auto-unselectify): Exported generic functions
(setf autolock): Exported generic functions
(setf autolock): Exported generic functions
(setf avoid-overlap): Exported generic functions
(setf avoid-overlap): Exported generic functions
(setf avoid-overlap-padding): Exported generic functions
(setf avoid-overlap-padding): Exported generic functions
(setf bounding-box): Exported generic functions
(setf bounding-box): Exported generic functions
(setf box-selection-enabled): Exported generic functions
(setf box-selection-enabled): Exported generic functions
(setf circle): Exported generic functions
(setf circle): Exported generic functions
(setf classes): Exported generic functions
(setf classes): Exported generic functions
(setf clockwise): Exported generic functions
(setf clockwise): Exported generic functions
(setf cols): Exported generic functions
(setf cols): Exported generic functions
(setf commands): Exported generic functions
(setf commands): Exported generic functions
(setf component-spacing): Exported generic functions
(setf component-spacing): Exported generic functions
(setf condense): Exported generic functions
(setf condense): Exported generic functions
(setf content): Exported generic functions
(setf content): Exported generic functions
(setf content-style): Exported generic functions
(setf content-style): Exported generic functions
(setf context-menus): Exported generic functions
(setf context-menus): Exported generic functions
(setf convergence-threshold): Exported generic functions
(setf convergence-threshold): Exported generic functions
(setf cooling-factor): Exported generic functions
(setf cooling-factor): Exported generic functions
(setf data): Exported generic functions
(setf data): Exported generic functions
(setf desktop-tap-threshold): Exported generic functions
(setf desktop-tap-threshold): Exported generic functions
(setf directed): Exported generic functions
(setf directed): Exported generic functions
(setf edge-elasticity): Exported generic functions
(setf edge-elasticity): Exported generic functions
(setf edge-elasticity): Exported generic functions
(setf edge-jaccard-length): Exported generic functions
(setf edge-jaccard-length): Exported generic functions
(setf edge-length): Exported generic functions
(setf edge-length): Exported generic functions
(setf edge-sep): Exported generic functions
(setf edge-sep): Exported generic functions
(setf edge-sym-diff-length): Exported generic functions
(setf edge-sym-diff-length): Exported generic functions
(setf edge-weight): Exported generic functions
(setf edge-weight): Exported generic functions
(setf elements): Exported generic functions
(setf elements): Exported generic functions
(setf enabled): Exported generic functions
(setf enabled): Exported generic functions
(setf equidistant): Exported generic functions
(setf equidistant): Exported generic functions
(setf fill-color): Exported generic functions
(setf fill-color): Exported generic functions
(setf fill-color): Exported generic functions
(setf fit): Exported generic functions
(setf fit): Exported generic functions
(setf flow): Exported generic functions
(setf flow): Exported generic functions
(setf gap-inequalities): Exported generic functions
(setf gap-inequalities): Exported generic functions
(setf grabbable): Exported generic functions
(setf grabbable): Exported generic functions
(setf grabbed): Exported generic functions
(setf grabbed): Exported generic functions
(setf graph-layouts): Exported generic functions
(setf graph-layouts): Exported generic functions
(setf graph-style): Exported generic functions
(setf graph-style): Exported generic functions
(setf gravity): Exported generic functions
(setf gravity): Exported generic functions
(setf gravity-compound): Exported generic functions
(setf gravity-compound): Exported generic functions
(setf gravity-range): Exported generic functions
(setf gravity-range): Exported generic functions
(setf gravity-range-compound): Exported generic functions
(setf gravity-range-compound): Exported generic functions
(setf grid): Exported generic functions
(setf grid): Exported generic functions
(setf group): Exported generic functions
(setf group): Exported generic functions
(setf handle-disconnected): Exported generic functions
(setf handle-disconnected): Exported generic functions
(setf headless): Exported generic functions
(setf headless): Exported generic functions
(setf hide-edges-on-viewport): Exported generic functions
(setf hide-edges-on-viewport): Exported generic functions
(setf ideal-edge-length): Exported generic functions
(setf ideal-edge-length): Exported generic functions
(setf ideal-edge-length): Exported generic functions
(setf indicator-size): Exported generic functions
(setf indicator-size): Exported generic functions
(setf initial-energy-on-incremental): Exported generic functions
(setf initial-energy-on-incremental): Exported generic functions
(setf initial-temp): Exported generic functions
(setf initial-temp): Exported generic functions
(setf item-color): Exported generic functions
(setf item-color): Exported generic functions
(setf item-text-shadow-color): Exported generic functions
(setf item-text-shadow-color): Exported generic functions
(setf locked): Exported generic functions
(setf locked): Exported generic functions
(setf max-simulation-time): Exported generic functions
(setf max-simulation-time): Exported generic functions
(setf max-spotlight-radius): Exported generic functions
(setf max-spotlight-radius): Exported generic functions
(setf max-zoom): Exported generic functions
(setf max-zoom): Exported generic functions
(setf maximal): Exported generic functions
(setf maximal): Exported generic functions
(setf menu-radius): Exported generic functions
(setf menu-radius): Exported generic functions
(setf min-length): Exported generic functions
(setf min-length): Exported generic functions
(setf min-node-spacing): Exported generic functions
(setf min-node-spacing): Exported generic functions
(setf min-spotlight-radius): Exported generic functions
(setf min-spotlight-radius): Exported generic functions
(setf min-temp): Exported generic functions
(setf min-temp): Exported generic functions
(setf min-zoom): Exported generic functions
(setf min-zoom): Exported generic functions
(setf motion-blur): Exported generic functions
(setf motion-blur): Exported generic functions
(setf motion-blur-opacity): Exported generic functions
(setf motion-blur-opacity): Exported generic functions
(setf nesting-factor): Exported generic functions
(setf nesting-factor): Exported generic functions
(setf node-dimensions-include-labels): Exported generic functions
(setf node-dimensions-include-labels): Exported generic functions
(setf node-overlap): Exported generic functions
(setf node-overlap): Exported generic functions
(setf node-repulsion): Exported generic functions
(setf node-repulsion): Exported generic functions
(setf node-repulsion): Exported generic functions
(setf node-sep): Exported generic functions
(setf node-sep): Exported generic functions
(setf node-separation): Exported generic functions
(setf node-separation): Exported generic functions
(setf num-iter): Exported generic functions
(setf num-iter): Exported generic functions
(setf on-select): Internal generic functions
(setf on-select): Internal generic functions
(setf open-menu-events): Internal generic functions
(setf open-menu-events): Internal generic functions
(setf pack-components): Exported generic functions
(setf pack-components): Exported generic functions
(setf padding): Exported generic functions
(setf padding): Exported generic functions
(setf pan): Exported generic functions
(setf pan): Exported generic functions
(setf pan): Exported generic functions
(setf panning-enabled): Exported generic functions
(setf panning-enabled): Exported generic functions
(setf pi-tol): Exported generic functions
(setf pi-tol): Exported generic functions
(setf quality): Exported generic functions
(setf quality): Exported generic functions
(setf radius): Exported generic functions
(setf radius): Exported generic functions
(setf randomize): Exported generic functions
(setf randomize): Exported generic functions
(setf rank-dir): Exported generic functions
(setf rank-dir): Exported generic functions
(setf rank-sep): Exported generic functions
(setf rank-sep): Exported generic functions
(setf ranker): Exported generic functions
(setf ranker): Exported generic functions
(setf refresh): Exported generic functions
(setf refresh): Exported generic functions
(setf removed): Exported generic functions
(setf removed): Exported generic functions
(setf roots): Exported generic functions
(setf roots): Exported generic functions
(setf rows): Exported generic functions
(setf rows): Exported generic functions
(setf sample-size): Exported generic functions
(setf sample-size): Exported generic functions
(setf sampling-type): Exported generic functions
(setf sampling-type): Exported generic functions
(setf selectable): Exported generic functions
(setf selectable): Exported generic functions
(setf selected): Exported generic functions
(setf selected): Exported generic functions
(setf selection-type): Exported generic functions
(setf selection-type): Exported generic functions
(setf selector): Exported generic functions
(setf selector): Exported generic functions
(setf selector): Exported generic functions
(setf separator-width): Exported generic functions
(setf separator-width): Exported generic functions
(setf spacing-factor): Exported generic functions
(setf spacing-factor): Exported generic functions
(setf spotlight-padding): Exported generic functions
(setf spotlight-padding): Exported generic functions
(setf start-angle): Exported generic functions
(setf start-angle): Exported generic functions
(setf style-enabled): Exported generic functions
(setf style-enabled): Exported generic functions
(setf sweep): Exported generic functions
(setf sweep): Exported generic functions
(setf texture-on-viewport): Exported generic functions
(setf texture-on-viewport): Exported generic functions
(setf tile): Exported generic functions
(setf tile): Exported generic functions
(setf tile-padding-horizontal): Exported generic functions
(setf tile-padding-horizontal): Exported generic functions
(setf tile-padding-vertical): Exported generic functions
(setf tile-padding-vertical): Exported generic functions
(setf tooltip-source): Exported generic functions
(setf tooltip-source): Exported generic functions
(setf touch-tap-threshold): Exported generic functions
(setf touch-tap-threshold): Exported generic functions
(setf unconst-iter): Exported generic functions
(setf unconst-iter): Exported generic functions
(setf ungrabify-while-simulating): Exported generic functions
(setf ungrabify-while-simulating): Exported generic functions
(setf uniform-node-dimensions): Exported generic functions
(setf uniform-node-dimensions): Exported generic functions
(setf user-const-iter): Exported generic functions
(setf user-const-iter): Exported generic functions
(setf user-panning-enabled): Exported generic functions
(setf user-panning-enabled): Exported generic functions
(setf user-zooming-enabled): Exported generic functions
(setf user-zooming-enabled): Exported generic functions
(setf wheel-sensitivity): Exported generic functions
(setf wheel-sensitivity): Exported generic functions
(setf z-index): Exported generic functions
(setf z-index): Exported generic functions
(setf zoom): Exported generic functions
(setf zoom): Exported generic functions
(setf zoom): Exported generic functions
(setf zooming-enabled): Exported generic functions
(setf zooming-enabled): Exported generic functions

A
active-fill-color: Exported generic functions
active-fill-color: Exported generic functions
active-padding: Exported generic functions
active-padding: Exported generic functions
add-graph: Exported generic functions
add-graph: Exported generic functions
alignment: Exported generic functions
alignment: Exported generic functions
all-const-iter: Exported generic functions
all-const-iter: Exported generic functions
animate: Exported generic functions
animate: Exported generic functions
animation-duration: Exported generic functions
animation-duration: Exported generic functions
animation-easing: Exported generic functions
animation-easing: Exported generic functions
at-mouse: Exported generic functions
at-mouse: Exported generic functions
auto-ungrabify: Exported generic functions
auto-ungrabify: Exported generic functions
auto-unselectify: Exported generic functions
auto-unselectify: Exported generic functions
autolock: Exported generic functions
autolock: Exported generic functions
avoid-overlap: Exported generic functions
avoid-overlap: Exported generic functions
avoid-overlap-padding: Exported generic functions
avoid-overlap-padding: Exported generic functions

B
bounding-box: Exported generic functions
bounding-box: Exported generic functions
box-selection-enabled: Exported generic functions
box-selection-enabled: Exported generic functions

C
center: Exported functions
circle: Exported generic functions
circle: Exported generic functions
classes: Exported generic functions
classes: Exported generic functions
clockwise: Exported generic functions
clockwise: Exported generic functions
cols: Exported generic functions
cols: Exported generic functions
commands: Exported generic functions
commands: Exported generic functions
component-spacing: Exported generic functions
component-spacing: Exported generic functions
condense: Exported generic functions
condense: Exported generic functions
content: Exported generic functions
content: Exported generic functions
content-style: Exported generic functions
content-style: Exported generic functions
context-menus: Exported generic functions
context-menus: Exported generic functions
convergence-threshold: Exported generic functions
convergence-threshold: Exported generic functions
cooling-factor: Exported generic functions
cooling-factor: Exported generic functions

D
data: Exported generic functions
data: Exported generic functions
desktop-tap-threshold: Exported generic functions
desktop-tap-threshold: Exported generic functions
directed: Exported generic functions
directed: Exported generic functions

E
edge-elasticity: Exported generic functions
edge-elasticity: Exported generic functions
edge-elasticity: Exported generic functions
edge-jaccard-length: Exported generic functions
edge-jaccard-length: Exported generic functions
edge-length: Exported generic functions
edge-length: Exported generic functions
edge-sep: Exported generic functions
edge-sep: Exported generic functions
edge-sym-diff-length: Exported generic functions
edge-sym-diff-length: Exported generic functions
edge-weight: Exported generic functions
edge-weight: Exported generic functions
elements: Exported generic functions
elements: Exported generic functions
enabled: Exported generic functions
enabled: Exported generic functions
equidistant: Exported generic functions
equidistant: Exported generic functions

F
fill-color: Exported generic functions
fill-color: Exported generic functions
fill-color: Exported generic functions
fit: Exported generic functions
fit: Exported generic functions
fit-elements: Exported functions
flow: Exported generic functions
flow: Exported generic functions
Function, center: Exported functions
Function, fit-elements: Exported functions
Function, layout: Exported functions
Function, on-layout-stop: Exported functions
Function, on-menu-command-select: Exported functions
Function, reset: Exported functions
Function, toggle-fullscreen: Exported functions

G
gap-inequalities: Exported generic functions
gap-inequalities: Exported generic functions
Generic Function, %on-layout-stop: Exported generic functions
Generic Function, %position: Internal generic functions
Generic Function, (setf %on-layout-stop): Exported generic functions
Generic Function, (setf %position): Internal generic functions
Generic Function, (setf active-fill-color): Exported generic functions
Generic Function, (setf active-padding): Exported generic functions
Generic Function, (setf alignment): Exported generic functions
Generic Function, (setf all-const-iter): Exported generic functions
Generic Function, (setf animate): Exported generic functions
Generic Function, (setf animation-duration): Exported generic functions
Generic Function, (setf animation-easing): Exported generic functions
Generic Function, (setf at-mouse): Exported generic functions
Generic Function, (setf auto-ungrabify): Exported generic functions
Generic Function, (setf auto-unselectify): Exported generic functions
Generic Function, (setf autolock): Exported generic functions
Generic Function, (setf avoid-overlap): Exported generic functions
Generic Function, (setf avoid-overlap-padding): Exported generic functions
Generic Function, (setf bounding-box): Exported generic functions
Generic Function, (setf box-selection-enabled): Exported generic functions
Generic Function, (setf circle): Exported generic functions
Generic Function, (setf classes): Exported generic functions
Generic Function, (setf clockwise): Exported generic functions
Generic Function, (setf cols): Exported generic functions
Generic Function, (setf commands): Exported generic functions
Generic Function, (setf component-spacing): Exported generic functions
Generic Function, (setf condense): Exported generic functions
Generic Function, (setf content): Exported generic functions
Generic Function, (setf content-style): Exported generic functions
Generic Function, (setf context-menus): Exported generic functions
Generic Function, (setf convergence-threshold): Exported generic functions
Generic Function, (setf cooling-factor): Exported generic functions
Generic Function, (setf data): Exported generic functions
Generic Function, (setf desktop-tap-threshold): Exported generic functions
Generic Function, (setf directed): Exported generic functions
Generic Function, (setf edge-elasticity): Exported generic functions
Generic Function, (setf edge-jaccard-length): Exported generic functions
Generic Function, (setf edge-length): Exported generic functions
Generic Function, (setf edge-sep): Exported generic functions
Generic Function, (setf edge-sym-diff-length): Exported generic functions
Generic Function, (setf edge-weight): Exported generic functions
Generic Function, (setf elements): Exported generic functions
Generic Function, (setf enabled): Exported generic functions
Generic Function, (setf equidistant): Exported generic functions
Generic Function, (setf fill-color): Exported generic functions
Generic Function, (setf fit): Exported generic functions
Generic Function, (setf flow): Exported generic functions
Generic Function, (setf gap-inequalities): Exported generic functions
Generic Function, (setf grabbable): Exported generic functions
Generic Function, (setf grabbed): Exported generic functions
Generic Function, (setf graph-layouts): Exported generic functions
Generic Function, (setf graph-style): Exported generic functions
Generic Function, (setf gravity): Exported generic functions
Generic Function, (setf gravity-compound): Exported generic functions
Generic Function, (setf gravity-range): Exported generic functions
Generic Function, (setf gravity-range-compound): Exported generic functions
Generic Function, (setf grid): Exported generic functions
Generic Function, (setf group): Exported generic functions
Generic Function, (setf handle-disconnected): Exported generic functions
Generic Function, (setf headless): Exported generic functions
Generic Function, (setf hide-edges-on-viewport): Exported generic functions
Generic Function, (setf ideal-edge-length): Exported generic functions
Generic Function, (setf indicator-size): Exported generic functions
Generic Function, (setf initial-energy-on-incremental): Exported generic functions
Generic Function, (setf initial-temp): Exported generic functions
Generic Function, (setf item-color): Exported generic functions
Generic Function, (setf item-text-shadow-color): Exported generic functions
Generic Function, (setf locked): Exported generic functions
Generic Function, (setf max-simulation-time): Exported generic functions
Generic Function, (setf max-spotlight-radius): Exported generic functions
Generic Function, (setf max-zoom): Exported generic functions
Generic Function, (setf maximal): Exported generic functions
Generic Function, (setf menu-radius): Exported generic functions
Generic Function, (setf min-length): Exported generic functions
Generic Function, (setf min-node-spacing): Exported generic functions
Generic Function, (setf min-spotlight-radius): Exported generic functions
Generic Function, (setf min-temp): Exported generic functions
Generic Function, (setf min-zoom): Exported generic functions
Generic Function, (setf motion-blur): Exported generic functions
Generic Function, (setf motion-blur-opacity): Exported generic functions
Generic Function, (setf nesting-factor): Exported generic functions
Generic Function, (setf node-dimensions-include-labels): Exported generic functions
Generic Function, (setf node-overlap): Exported generic functions
Generic Function, (setf node-repulsion): Exported generic functions
Generic Function, (setf node-sep): Exported generic functions
Generic Function, (setf node-separation): Exported generic functions
Generic Function, (setf num-iter): Exported generic functions
Generic Function, (setf on-select): Internal generic functions
Generic Function, (setf open-menu-events): Internal generic functions
Generic Function, (setf pack-components): Exported generic functions
Generic Function, (setf padding): Exported generic functions
Generic Function, (setf pan): Exported generic functions
Generic Function, (setf panning-enabled): Exported generic functions
Generic Function, (setf pi-tol): Exported generic functions
Generic Function, (setf quality): Exported generic functions
Generic Function, (setf radius): Exported generic functions
Generic Function, (setf randomize): Exported generic functions
Generic Function, (setf rank-dir): Exported generic functions
Generic Function, (setf rank-sep): Exported generic functions
Generic Function, (setf ranker): Exported generic functions
Generic Function, (setf refresh): Exported generic functions
Generic Function, (setf removed): Exported generic functions
Generic Function, (setf roots): Exported generic functions
Generic Function, (setf rows): Exported generic functions
Generic Function, (setf sample-size): Exported generic functions
Generic Function, (setf sampling-type): Exported generic functions
Generic Function, (setf selectable): Exported generic functions
Generic Function, (setf selected): Exported generic functions
Generic Function, (setf selection-type): Exported generic functions
Generic Function, (setf selector): Exported generic functions
Generic Function, (setf separator-width): Exported generic functions
Generic Function, (setf spacing-factor): Exported generic functions
Generic Function, (setf spotlight-padding): Exported generic functions
Generic Function, (setf start-angle): Exported generic functions
Generic Function, (setf style-enabled): Exported generic functions
Generic Function, (setf sweep): Exported generic functions
Generic Function, (setf texture-on-viewport): Exported generic functions
Generic Function, (setf tile): Exported generic functions
Generic Function, (setf tile-padding-horizontal): Exported generic functions
Generic Function, (setf tile-padding-vertical): Exported generic functions
Generic Function, (setf tooltip-source): Exported generic functions
Generic Function, (setf touch-tap-threshold): Exported generic functions
Generic Function, (setf unconst-iter): Exported generic functions
Generic Function, (setf ungrabify-while-simulating): Exported generic functions
Generic Function, (setf uniform-node-dimensions): Exported generic functions
Generic Function, (setf user-const-iter): Exported generic functions
Generic Function, (setf user-panning-enabled): Exported generic functions
Generic Function, (setf user-zooming-enabled): Exported generic functions
Generic Function, (setf wheel-sensitivity): Exported generic functions
Generic Function, (setf z-index): Exported generic functions
Generic Function, (setf zoom): Exported generic functions
Generic Function, (setf zooming-enabled): Exported generic functions
Generic Function, active-fill-color: Exported generic functions
Generic Function, active-padding: Exported generic functions
Generic Function, add-graph: Exported generic functions
Generic Function, alignment: Exported generic functions
Generic Function, all-const-iter: Exported generic functions
Generic Function, animate: Exported generic functions
Generic Function, animation-duration: Exported generic functions
Generic Function, animation-easing: Exported generic functions
Generic Function, at-mouse: Exported generic functions
Generic Function, auto-ungrabify: Exported generic functions
Generic Function, auto-unselectify: Exported generic functions
Generic Function, autolock: Exported generic functions
Generic Function, avoid-overlap: Exported generic functions
Generic Function, avoid-overlap-padding: Exported generic functions
Generic Function, bounding-box: Exported generic functions
Generic Function, box-selection-enabled: Exported generic functions
Generic Function, circle: Exported generic functions
Generic Function, classes: Exported generic functions
Generic Function, clockwise: Exported generic functions
Generic Function, cols: Exported generic functions
Generic Function, commands: Exported generic functions
Generic Function, component-spacing: Exported generic functions
Generic Function, condense: Exported generic functions
Generic Function, content: Exported generic functions
Generic Function, content-style: Exported generic functions
Generic Function, context-menus: Exported generic functions
Generic Function, convergence-threshold: Exported generic functions
Generic Function, cooling-factor: Exported generic functions
Generic Function, data: Exported generic functions
Generic Function, desktop-tap-threshold: Exported generic functions
Generic Function, directed: Exported generic functions
Generic Function, edge-elasticity: Exported generic functions
Generic Function, edge-jaccard-length: Exported generic functions
Generic Function, edge-length: Exported generic functions
Generic Function, edge-sep: Exported generic functions
Generic Function, edge-sym-diff-length: Exported generic functions
Generic Function, edge-weight: Exported generic functions
Generic Function, elements: Exported generic functions
Generic Function, enabled: Exported generic functions
Generic Function, equidistant: Exported generic functions
Generic Function, fill-color: Exported generic functions
Generic Function, fit: Exported generic functions
Generic Function, flow: Exported generic functions
Generic Function, gap-inequalities: Exported generic functions
Generic Function, grabbable: Exported generic functions
Generic Function, grabbed: Exported generic functions
Generic Function, graph-layouts: Exported generic functions
Generic Function, graph-style: Exported generic functions
Generic Function, gravity: Exported generic functions
Generic Function, gravity-compound: Exported generic functions
Generic Function, gravity-range: Exported generic functions
Generic Function, gravity-range-compound: Exported generic functions
Generic Function, grid: Exported generic functions
Generic Function, group: Exported generic functions
Generic Function, handle-disconnected: Exported generic functions
Generic Function, headless: Exported generic functions
Generic Function, hide-edges-on-viewport: Exported generic functions
Generic Function, ideal-edge-length: Exported generic functions
Generic Function, indicator-size: Exported generic functions
Generic Function, initial-energy-on-incremental: Exported generic functions
Generic Function, initial-temp: Exported generic functions
Generic Function, item-color: Exported generic functions
Generic Function, item-text-shadow-color: Exported generic functions
Generic Function, locked: Exported generic functions
Generic Function, max-simulation-time: Exported generic functions
Generic Function, max-spotlight-radius: Exported generic functions
Generic Function, max-zoom: Exported generic functions
Generic Function, maximal: Exported generic functions
Generic Function, menu-radius: Exported generic functions
Generic Function, min-length: Exported generic functions
Generic Function, min-node-spacing: Exported generic functions
Generic Function, min-spotlight-radius: Exported generic functions
Generic Function, min-temp: Exported generic functions
Generic Function, min-zoom: Exported generic functions
Generic Function, motion-blur: Exported generic functions
Generic Function, motion-blur-opacity: Exported generic functions
Generic Function, nesting-factor: Exported generic functions
Generic Function, node-dimensions-include-labels: Exported generic functions
Generic Function, node-overlap: Exported generic functions
Generic Function, node-repulsion: Exported generic functions
Generic Function, node-sep: Exported generic functions
Generic Function, node-separation: Exported generic functions
Generic Function, num-iter: Exported generic functions
Generic Function, on-select: Internal generic functions
Generic Function, open-menu-events: Internal generic functions
Generic Function, pack-components: Exported generic functions
Generic Function, padding: Exported generic functions
Generic Function, pan: Exported generic functions
Generic Function, panning-enabled: Exported generic functions
Generic Function, pi-tol: Exported generic functions
Generic Function, quality: Exported generic functions
Generic Function, radius: Exported generic functions
Generic Function, randomize: Exported generic functions
Generic Function, rank-dir: Exported generic functions
Generic Function, rank-sep: Exported generic functions
Generic Function, ranker: Exported generic functions
Generic Function, refresh: Exported generic functions
Generic Function, removed: Exported generic functions
Generic Function, roots: Exported generic functions
Generic Function, rows: Exported generic functions
Generic Function, sample-size: Exported generic functions
Generic Function, sampling-type: Exported generic functions
Generic Function, selectable: Exported generic functions
Generic Function, selected: Exported generic functions
Generic Function, selection-type: Exported generic functions
Generic Function, selector: Exported generic functions
Generic Function, separator-width: Exported generic functions
Generic Function, spacing-factor: Exported generic functions
Generic Function, spotlight-padding: Exported generic functions
Generic Function, start-angle: Exported generic functions
Generic Function, style-enabled: Exported generic functions
Generic Function, sweep: Exported generic functions
Generic Function, texture-on-viewport: Exported generic functions
Generic Function, tile: Exported generic functions
Generic Function, tile-padding-horizontal: Exported generic functions
Generic Function, tile-padding-vertical: Exported generic functions
Generic Function, tooltip-source: Exported generic functions
Generic Function, touch-tap-threshold: Exported generic functions
Generic Function, unconst-iter: Exported generic functions
Generic Function, ungrabify-while-simulating: Exported generic functions
Generic Function, uniform-node-dimensions: Exported generic functions
Generic Function, user-const-iter: Exported generic functions
Generic Function, user-panning-enabled: Exported generic functions
Generic Function, user-zooming-enabled: Exported generic functions
Generic Function, wheel-sensitivity: Exported generic functions
Generic Function, z-index: Exported generic functions
Generic Function, zoom: Exported generic functions
Generic Function, zooming-enabled: Exported generic functions
grabbable: Exported generic functions
grabbable: Exported generic functions
grabbed: Exported generic functions
grabbed: Exported generic functions
graph-layouts: Exported generic functions
graph-layouts: Exported generic functions
graph-style: Exported generic functions
graph-style: Exported generic functions
gravity: Exported generic functions
gravity: Exported generic functions
gravity-compound: Exported generic functions
gravity-compound: Exported generic functions
gravity-range: Exported generic functions
gravity-range: Exported generic functions
gravity-range-compound: Exported generic functions
gravity-range-compound: Exported generic functions
grid: Exported generic functions
grid: Exported generic functions
group: Exported generic functions
group: Exported generic functions

H
handle-disconnected: Exported generic functions
handle-disconnected: Exported generic functions
headless: Exported generic functions
headless: Exported generic functions
hide-edges-on-viewport: Exported generic functions
hide-edges-on-viewport: Exported generic functions

I
ideal-edge-length: Exported generic functions
ideal-edge-length: Exported generic functions
ideal-edge-length: Exported generic functions
indicator-size: Exported generic functions
indicator-size: Exported generic functions
initial-energy-on-incremental: Exported generic functions
initial-energy-on-incremental: Exported generic functions
initial-temp: Exported generic functions
initial-temp: Exported generic functions
item-color: Exported generic functions
item-color: Exported generic functions
item-text-shadow-color: Exported generic functions
item-text-shadow-color: Exported generic functions

L
layout: Exported functions
locked: Exported generic functions
locked: Exported generic functions

M
max-simulation-time: Exported generic functions
max-simulation-time: Exported generic functions
max-spotlight-radius: Exported generic functions
max-spotlight-radius: Exported generic functions
max-zoom: Exported generic functions
max-zoom: Exported generic functions
maximal: Exported generic functions
maximal: Exported generic functions
menu-radius: Exported generic functions
menu-radius: Exported generic functions
Method, %on-layout-stop: Exported generic functions
Method, %position: Internal generic functions
Method, (setf %on-layout-stop): Exported generic functions
Method, (setf %position): Internal generic functions
Method, (setf active-fill-color): Exported generic functions
Method, (setf active-padding): Exported generic functions
Method, (setf alignment): Exported generic functions
Method, (setf all-const-iter): Exported generic functions
Method, (setf animate): Exported generic functions
Method, (setf animation-duration): Exported generic functions
Method, (setf animation-easing): Exported generic functions
Method, (setf at-mouse): Exported generic functions
Method, (setf auto-ungrabify): Exported generic functions
Method, (setf auto-unselectify): Exported generic functions
Method, (setf autolock): Exported generic functions
Method, (setf avoid-overlap): Exported generic functions
Method, (setf avoid-overlap-padding): Exported generic functions
Method, (setf bounding-box): Exported generic functions
Method, (setf box-selection-enabled): Exported generic functions
Method, (setf circle): Exported generic functions
Method, (setf classes): Exported generic functions
Method, (setf clockwise): Exported generic functions
Method, (setf cols): Exported generic functions
Method, (setf commands): Exported generic functions
Method, (setf component-spacing): Exported generic functions
Method, (setf condense): Exported generic functions
Method, (setf content): Exported generic functions
Method, (setf content-style): Exported generic functions
Method, (setf context-menus): Exported generic functions
Method, (setf convergence-threshold): Exported generic functions
Method, (setf cooling-factor): Exported generic functions
Method, (setf data): Exported generic functions
Method, (setf desktop-tap-threshold): Exported generic functions
Method, (setf directed): Exported generic functions
Method, (setf edge-elasticity): Exported generic functions
Method, (setf edge-elasticity): Exported generic functions
Method, (setf edge-jaccard-length): Exported generic functions
Method, (setf edge-length): Exported generic functions
Method, (setf edge-sep): Exported generic functions
Method, (setf edge-sym-diff-length): Exported generic functions
Method, (setf edge-weight): Exported generic functions
Method, (setf elements): Exported generic functions
Method, (setf enabled): Exported generic functions
Method, (setf equidistant): Exported generic functions
Method, (setf fill-color): Exported generic functions
Method, (setf fill-color): Exported generic functions
Method, (setf fit): Exported generic functions
Method, (setf flow): Exported generic functions
Method, (setf gap-inequalities): Exported generic functions
Method, (setf grabbable): Exported generic functions
Method, (setf grabbed): Exported generic functions
Method, (setf graph-layouts): Exported generic functions
Method, (setf graph-style): Exported generic functions
Method, (setf gravity): Exported generic functions
Method, (setf gravity-compound): Exported generic functions
Method, (setf gravity-range): Exported generic functions
Method, (setf gravity-range-compound): Exported generic functions
Method, (setf grid): Exported generic functions
Method, (setf group): Exported generic functions
Method, (setf handle-disconnected): Exported generic functions
Method, (setf headless): Exported generic functions
Method, (setf hide-edges-on-viewport): Exported generic functions
Method, (setf ideal-edge-length): Exported generic functions
Method, (setf ideal-edge-length): Exported generic functions
Method, (setf indicator-size): Exported generic functions
Method, (setf initial-energy-on-incremental): Exported generic functions
Method, (setf initial-temp): Exported generic functions
Method, (setf item-color): Exported generic functions
Method, (setf item-text-shadow-color): Exported generic functions
Method, (setf locked): Exported generic functions
Method, (setf max-simulation-time): Exported generic functions
Method, (setf max-spotlight-radius): Exported generic functions
Method, (setf max-zoom): Exported generic functions
Method, (setf maximal): Exported generic functions
Method, (setf menu-radius): Exported generic functions
Method, (setf min-length): Exported generic functions
Method, (setf min-node-spacing): Exported generic functions
Method, (setf min-spotlight-radius): Exported generic functions
Method, (setf min-temp): Exported generic functions
Method, (setf min-zoom): Exported generic functions
Method, (setf motion-blur): Exported generic functions
Method, (setf motion-blur-opacity): Exported generic functions
Method, (setf nesting-factor): Exported generic functions
Method, (setf node-dimensions-include-labels): Exported generic functions
Method, (setf node-overlap): Exported generic functions
Method, (setf node-repulsion): Exported generic functions
Method, (setf node-repulsion): Exported generic functions
Method, (setf node-sep): Exported generic functions
Method, (setf node-separation): Exported generic functions
Method, (setf num-iter): Exported generic functions
Method, (setf on-select): Internal generic functions
Method, (setf open-menu-events): Internal generic functions
Method, (setf pack-components): Exported generic functions
Method, (setf padding): Exported generic functions
Method, (setf pan): Exported generic functions
Method, (setf pan): Exported generic functions
Method, (setf panning-enabled): Exported generic functions
Method, (setf pi-tol): Exported generic functions
Method, (setf quality): Exported generic functions
Method, (setf radius): Exported generic functions
Method, (setf randomize): Exported generic functions
Method, (setf rank-dir): Exported generic functions
Method, (setf rank-sep): Exported generic functions
Method, (setf ranker): Exported generic functions
Method, (setf refresh): Exported generic functions
Method, (setf removed): Exported generic functions
Method, (setf roots): Exported generic functions
Method, (setf rows): Exported generic functions
Method, (setf sample-size): Exported generic functions
Method, (setf sampling-type): Exported generic functions
Method, (setf selectable): Exported generic functions
Method, (setf selected): Exported generic functions
Method, (setf selection-type): Exported generic functions
Method, (setf selector): Exported generic functions
Method, (setf selector): Exported generic functions
Method, (setf separator-width): Exported generic functions
Method, (setf spacing-factor): Exported generic functions
Method, (setf spotlight-padding): Exported generic functions
Method, (setf start-angle): Exported generic functions
Method, (setf style-enabled): Exported generic functions
Method, (setf sweep): Exported generic functions
Method, (setf texture-on-viewport): Exported generic functions
Method, (setf tile): Exported generic functions
Method, (setf tile-padding-horizontal): Exported generic functions
Method, (setf tile-padding-vertical): Exported generic functions
Method, (setf tooltip-source): Exported generic functions
Method, (setf touch-tap-threshold): Exported generic functions
Method, (setf unconst-iter): Exported generic functions
Method, (setf ungrabify-while-simulating): Exported generic functions
Method, (setf uniform-node-dimensions): Exported generic functions
Method, (setf user-const-iter): Exported generic functions
Method, (setf user-panning-enabled): Exported generic functions
Method, (setf user-zooming-enabled): Exported generic functions
Method, (setf wheel-sensitivity): Exported generic functions
Method, (setf z-index): Exported generic functions
Method, (setf zoom): Exported generic functions
Method, (setf zoom): Exported generic functions
Method, (setf zooming-enabled): Exported generic functions
Method, active-fill-color: Exported generic functions
Method, active-padding: Exported generic functions
Method, add-graph: Exported generic functions
Method, alignment: Exported generic functions
Method, all-const-iter: Exported generic functions
Method, animate: Exported generic functions
Method, animation-duration: Exported generic functions
Method, animation-easing: Exported generic functions
Method, at-mouse: Exported generic functions
Method, auto-ungrabify: Exported generic functions
Method, auto-unselectify: Exported generic functions
Method, autolock: Exported generic functions
Method, avoid-overlap: Exported generic functions
Method, avoid-overlap-padding: Exported generic functions
Method, bounding-box: Exported generic functions
Method, box-selection-enabled: Exported generic functions
Method, circle: Exported generic functions
Method, classes: Exported generic functions
Method, clockwise: Exported generic functions
Method, cols: Exported generic functions
Method, commands: Exported generic functions
Method, component-spacing: Exported generic functions
Method, condense: Exported generic functions
Method, content: Exported generic functions
Method, content-style: Exported generic functions
Method, context-menus: Exported generic functions
Method, convergence-threshold: Exported generic functions
Method, cooling-factor: Exported generic functions
Method, data: Exported generic functions
Method, desktop-tap-threshold: Exported generic functions
Method, directed: Exported generic functions
Method, edge-elasticity: Exported generic functions
Method, edge-elasticity: Exported generic functions
Method, edge-jaccard-length: Exported generic functions
Method, edge-length: Exported generic functions
Method, edge-sep: Exported generic functions
Method, edge-sym-diff-length: Exported generic functions
Method, edge-weight: Exported generic functions
Method, elements: Exported generic functions
Method, enabled: Exported generic functions
Method, equidistant: Exported generic functions
Method, fill-color: Exported generic functions
Method, fill-color: Exported generic functions
Method, fit: Exported generic functions
Method, flow: Exported generic functions
Method, gap-inequalities: Exported generic functions
Method, grabbable: Exported generic functions
Method, grabbed: Exported generic functions
Method, graph-layouts: Exported generic functions
Method, graph-style: Exported generic functions
Method, gravity: Exported generic functions
Method, gravity-compound: Exported generic functions
Method, gravity-range: Exported generic functions
Method, gravity-range-compound: Exported generic functions
Method, grid: Exported generic functions
Method, group: Exported generic functions
Method, handle-disconnected: Exported generic functions
Method, headless: Exported generic functions
Method, hide-edges-on-viewport: Exported generic functions
Method, ideal-edge-length: Exported generic functions
Method, ideal-edge-length: Exported generic functions
Method, indicator-size: Exported generic functions
Method, initial-energy-on-incremental: Exported generic functions
Method, initial-temp: Exported generic functions
Method, item-color: Exported generic functions
Method, item-text-shadow-color: Exported generic functions
Method, locked: Exported generic functions
Method, max-simulation-time: Exported generic functions
Method, max-spotlight-radius: Exported generic functions
Method, max-zoom: Exported generic functions
Method, maximal: Exported generic functions
Method, menu-radius: Exported generic functions
Method, min-length: Exported generic functions
Method, min-node-spacing: Exported generic functions
Method, min-spotlight-radius: Exported generic functions
Method, min-temp: Exported generic functions
Method, min-zoom: Exported generic functions
Method, motion-blur: Exported generic functions
Method, motion-blur-opacity: Exported generic functions
Method, nesting-factor: Exported generic functions
Method, node-dimensions-include-labels: Exported generic functions
Method, node-overlap: Exported generic functions
Method, node-repulsion: Exported generic functions
Method, node-repulsion: Exported generic functions
Method, node-sep: Exported generic functions
Method, node-separation: Exported generic functions
Method, num-iter: Exported generic functions
Method, on-select: Internal generic functions
Method, open-menu-events: Internal generic functions
Method, pack-components: Exported generic functions
Method, padding: Exported generic functions
Method, pan: Exported generic functions
Method, pan: Exported generic functions
Method, panning-enabled: Exported generic functions
Method, pi-tol: Exported generic functions
Method, quality: Exported generic functions
Method, radius: Exported generic functions
Method, randomize: Exported generic functions
Method, rank-dir: Exported generic functions
Method, rank-sep: Exported generic functions
Method, ranker: Exported generic functions
Method, refresh: Exported generic functions
Method, removed: Exported generic functions
Method, roots: Exported generic functions
Method, rows: Exported generic functions
Method, sample-size: Exported generic functions
Method, sampling-type: Exported generic functions
Method, selectable: Exported generic functions
Method, selected: Exported generic functions
Method, selection-type: Exported generic functions
Method, selector: Exported generic functions
Method, selector: Exported generic functions
Method, separator-width: Exported generic functions
Method, spacing-factor: Exported generic functions
Method, spotlight-padding: Exported generic functions
Method, start-angle: Exported generic functions
Method, style-enabled: Exported generic functions
Method, sweep: Exported generic functions
Method, texture-on-viewport: Exported generic functions
Method, tile: Exported generic functions
Method, tile-padding-horizontal: Exported generic functions
Method, tile-padding-vertical: Exported generic functions
Method, tooltip-source: Exported generic functions
Method, touch-tap-threshold: Exported generic functions
Method, unconst-iter: Exported generic functions
Method, ungrabify-while-simulating: Exported generic functions
Method, uniform-node-dimensions: Exported generic functions
Method, user-const-iter: Exported generic functions
Method, user-panning-enabled: Exported generic functions
Method, user-zooming-enabled: Exported generic functions
Method, wheel-sensitivity: Exported generic functions
Method, z-index: Exported generic functions
Method, zoom: Exported generic functions
Method, zoom: Exported generic functions
Method, zooming-enabled: Exported generic functions
min-length: Exported generic functions
min-length: Exported generic functions
min-node-spacing: Exported generic functions
min-node-spacing: Exported generic functions
min-spotlight-radius: Exported generic functions
min-spotlight-radius: Exported generic functions
min-temp: Exported generic functions
min-temp: Exported generic functions
min-zoom: Exported generic functions
min-zoom: Exported generic functions
motion-blur: Exported generic functions
motion-blur: Exported generic functions
motion-blur-opacity: Exported generic functions
motion-blur-opacity: Exported generic functions

N
nesting-factor: Exported generic functions
nesting-factor: Exported generic functions
node-dimensions-include-labels: Exported generic functions
node-dimensions-include-labels: Exported generic functions
node-overlap: Exported generic functions
node-overlap: Exported generic functions
node-repulsion: Exported generic functions
node-repulsion: Exported generic functions
node-repulsion: Exported generic functions
node-sep: Exported generic functions
node-sep: Exported generic functions
node-separation: Exported generic functions
node-separation: Exported generic functions
num-iter: Exported generic functions
num-iter: Exported generic functions

O
on-layout-stop: Exported functions
on-menu-command-select: Exported functions
on-select: Internal generic functions
on-select: Internal generic functions
open-menu-events: Internal generic functions
open-menu-events: Internal generic functions

P
pack-components: Exported generic functions
pack-components: Exported generic functions
padding: Exported generic functions
padding: Exported generic functions
pan: Exported generic functions
pan: Exported generic functions
pan: Exported generic functions
panning-enabled: Exported generic functions
panning-enabled: Exported generic functions
pi-tol: Exported generic functions
pi-tol: Exported generic functions

Q
quality: Exported generic functions
quality: Exported generic functions

R
radius: Exported generic functions
radius: Exported generic functions
randomize: Exported generic functions
randomize: Exported generic functions
rank-dir: Exported generic functions
rank-dir: Exported generic functions
rank-sep: Exported generic functions
rank-sep: Exported generic functions
ranker: Exported generic functions
ranker: Exported generic functions
refresh: Exported generic functions
refresh: Exported generic functions
removed: Exported generic functions
removed: Exported generic functions
reset: Exported functions
roots: Exported generic functions
roots: Exported generic functions
rows: Exported generic functions
rows: Exported generic functions

S
sample-size: Exported generic functions
sample-size: Exported generic functions
sampling-type: Exported generic functions
sampling-type: Exported generic functions
selectable: Exported generic functions
selectable: Exported generic functions
selected: Exported generic functions
selected: Exported generic functions
selection-type: Exported generic functions
selection-type: Exported generic functions
selector: Exported generic functions
selector: Exported generic functions
selector: Exported generic functions
separator-width: Exported generic functions
separator-width: Exported generic functions
spacing-factor: Exported generic functions
spacing-factor: Exported generic functions
spotlight-padding: Exported generic functions
spotlight-padding: Exported generic functions
start-angle: Exported generic functions
start-angle: Exported generic functions
style-enabled: Exported generic functions
style-enabled: Exported generic functions
sweep: Exported generic functions
sweep: Exported generic functions

T
texture-on-viewport: Exported generic functions
texture-on-viewport: Exported generic functions
tile: Exported generic functions
tile: Exported generic functions
tile-padding-horizontal: Exported generic functions
tile-padding-horizontal: Exported generic functions
tile-padding-vertical: Exported generic functions
tile-padding-vertical: Exported generic functions
toggle-fullscreen: Exported functions
tooltip-source: Exported generic functions
tooltip-source: Exported generic functions
touch-tap-threshold: Exported generic functions
touch-tap-threshold: Exported generic functions

U
unconst-iter: Exported generic functions
unconst-iter: Exported generic functions
ungrabify-while-simulating: Exported generic functions
ungrabify-while-simulating: Exported generic functions
uniform-node-dimensions: Exported generic functions
uniform-node-dimensions: Exported generic functions
user-const-iter: Exported generic functions
user-const-iter: Exported generic functions
user-panning-enabled: Exported generic functions
user-panning-enabled: Exported generic functions
user-zooming-enabled: Exported generic functions
user-zooming-enabled: Exported generic functions

W
wheel-sensitivity: Exported generic functions
wheel-sensitivity: Exported generic functions

Z
z-index: Exported generic functions
z-index: Exported generic functions
zoom: Exported generic functions
zoom: Exported generic functions
zoom: Exported generic functions
zooming-enabled: Exported generic functions
zooming-enabled: Exported generic functions

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A.3 Variables

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Index Entry  Section

+
+module-name+: Internal special variables
+module-version+: Internal special variables

A
active-fill-color: Exported classes
active-padding: Exported classes
alignment: Exported classes
all-const-iter: Exported classes
animate: Internal classes
animation-duration: Internal classes
animation-easing: Internal classes
at-mouse: Exported classes
auto-ungrabify: Exported classes
auto-unselectify: Exported classes
autolock: Exported classes
avoid-overlap: Internal classes
avoid-overlap-padding: Exported classes

B
bounding-box: Internal classes
box-selection-enabled: Exported classes

C
circle: Exported classes
classes: Exported classes
clockwise: Internal classes
cols: Exported classes
commands: Exported classes
component-spacing: Exported classes
condense: Exported classes
content: Exported classes
content-style: Exported classes
context-menus: Exported classes
convergence-threshold: Exported classes
cooling-factor: Exported classes

D
data: Exported classes
desktop-tap-threshold: Exported classes
directed: Exported classes

E
edge-elasticity: Exported classes
edge-elasticity: Exported classes
edge-jaccard-length: Exported classes
edge-length: Exported classes
edge-sep: Exported classes
edge-sym-diff-length: Exported classes
edge-weight: Exported classes
elements: Exported classes
enabled: Exported classes
equidistant: Exported classes

F
fill-color: Exported classes
fill-color: Exported classes
fit: Internal classes
flow: Exported classes

G
gap-inequalities: Exported classes
grabbable: Exported classes
grabbed: Exported classes
graph-layouts: Exported classes
graph-style: Exported classes
gravity: Internal classes
gravity-compound: Exported classes
gravity-range: Exported classes
gravity-range-compound: Exported classes
grid: Exported classes
group: Exported classes

H
handle-disconnected: Exported classes
headless: Exported classes
hide-edges-on-viewport: Exported classes

I
ideal-edge-length: Exported classes
ideal-edge-length: Exported classes
indicator-size: Exported classes
initial-energy-on-incremental: Exported classes
initial-temp: Exported classes
item-color: Exported classes
item-text-shadow-color: Exported classes

L
locked: Exported classes

M
max-simulation-time: Exported classes
max-spotlight-radius: Exported classes
max-zoom: Exported classes
maximal: Exported classes
menu-radius: Exported classes
min-length: Exported classes
min-node-spacing: Exported classes
min-spotlight-radius: Exported classes
min-temp: Exported classes
min-zoom: Exported classes
motion-blur: Exported classes
motion-blur-opacity: Exported classes

N
nesting-factor: Internal classes
node-dimensions-include-labels: Internal classes
node-overlap: Exported classes
node-repulsion: Exported classes
node-repulsion: Exported classes
node-sep: Exported classes
node-separation: Exported classes
num-iter: Internal classes

O
on-layout-stop: Exported classes
on-select: Exported classes
open-menu-events: Exported classes

P
pack-components: Exported classes
padding: Internal classes
pan: Exported classes
pan: Exported classes
panning-enabled: Exported classes
pi-tol: Exported classes
position: Exported classes

Q
quality: Exported classes

R
radius: Exported classes
randomize: Internal classes
rank-dir: Exported classes
rank-sep: Exported classes
ranker: Exported classes
refresh: Internal classes
removed: Exported classes
roots: Exported classes
rows: Exported classes

S
sample-size: Exported classes
sampling-type: Exported classes
selectable: Exported classes
selected: Exported classes
selection-type: Exported classes
selector: Exported classes
selector: Exported classes
separator-width: Exported classes
Slot, active-fill-color: Exported classes
Slot, active-padding: Exported classes
Slot, alignment: Exported classes
Slot, all-const-iter: Exported classes
Slot, animate: Internal classes
Slot, animation-duration: Internal classes
Slot, animation-easing: Internal classes
Slot, at-mouse: Exported classes
Slot, auto-ungrabify: Exported classes
Slot, auto-unselectify: Exported classes
Slot, autolock: Exported classes
Slot, avoid-overlap: Internal classes
Slot, avoid-overlap-padding: Exported classes
Slot, bounding-box: Internal classes
Slot, box-selection-enabled: Exported classes
Slot, circle: Exported classes
Slot, classes: Exported classes
Slot, clockwise: Internal classes
Slot, cols: Exported classes
Slot, commands: Exported classes
Slot, component-spacing: Exported classes
Slot, condense: Exported classes
Slot, content: Exported classes
Slot, content-style: Exported classes
Slot, context-menus: Exported classes
Slot, convergence-threshold: Exported classes
Slot, cooling-factor: Exported classes
Slot, data: Exported classes
Slot, desktop-tap-threshold: Exported classes
Slot, directed: Exported classes
Slot, edge-elasticity: Exported classes
Slot, edge-elasticity: Exported classes
Slot, edge-jaccard-length: Exported classes
Slot, edge-length: Exported classes
Slot, edge-sep: Exported classes
Slot, edge-sym-diff-length: Exported classes
Slot, edge-weight: Exported classes
Slot, elements: Exported classes
Slot, enabled: Exported classes
Slot, equidistant: Exported classes
Slot, fill-color: Exported classes
Slot, fill-color: Exported classes
Slot, fit: Internal classes
Slot, flow: Exported classes
Slot, gap-inequalities: Exported classes
Slot, grabbable: Exported classes
Slot, grabbed: Exported classes
Slot, graph-layouts: Exported classes
Slot, graph-style: Exported classes
Slot, gravity: Internal classes
Slot, gravity-compound: Exported classes
Slot, gravity-range: Exported classes
Slot, gravity-range-compound: Exported classes
Slot, grid: Exported classes
Slot, group: Exported classes
Slot, handle-disconnected: Exported classes
Slot, headless: Exported classes
Slot, hide-edges-on-viewport: Exported classes
Slot, ideal-edge-length: Exported classes
Slot, ideal-edge-length: Exported classes
Slot, indicator-size: Exported classes
Slot, initial-energy-on-incremental: Exported classes
Slot, initial-temp: Exported classes
Slot, item-color: Exported classes
Slot, item-text-shadow-color: Exported classes
Slot, locked: Exported classes
Slot, max-simulation-time: Exported classes
Slot, max-spotlight-radius: Exported classes
Slot, max-zoom: Exported classes
Slot, maximal: Exported classes
Slot, menu-radius: Exported classes
Slot, min-length: Exported classes
Slot, min-node-spacing: Exported classes
Slot, min-spotlight-radius: Exported classes
Slot, min-temp: Exported classes
Slot, min-zoom: Exported classes
Slot, motion-blur: Exported classes
Slot, motion-blur-opacity: Exported classes
Slot, nesting-factor: Internal classes
Slot, node-dimensions-include-labels: Internal classes
Slot, node-overlap: Exported classes
Slot, node-repulsion: Exported classes
Slot, node-repulsion: Exported classes
Slot, node-sep: Exported classes
Slot, node-separation: Exported classes
Slot, num-iter: Internal classes
Slot, on-layout-stop: Exported classes
Slot, on-select: Exported classes
Slot, open-menu-events: Exported classes
Slot, pack-components: Exported classes
Slot, padding: Internal classes
Slot, pan: Exported classes
Slot, pan: Exported classes
Slot, panning-enabled: Exported classes
Slot, pi-tol: Exported classes
Slot, position: Exported classes
Slot, quality: Exported classes
Slot, radius: Exported classes
Slot, randomize: Internal classes
Slot, rank-dir: Exported classes
Slot, rank-sep: Exported classes
Slot, ranker: Exported classes
Slot, refresh: Internal classes
Slot, removed: Exported classes
Slot, roots: Exported classes
Slot, rows: Exported classes
Slot, sample-size: Exported classes
Slot, sampling-type: Exported classes
Slot, selectable: Exported classes
Slot, selected: Exported classes
Slot, selection-type: Exported classes
Slot, selector: Exported classes
Slot, selector: Exported classes
Slot, separator-width: Exported classes
Slot, spacing-factor: Internal classes
Slot, spotlight-padding: Exported classes
Slot, start-angle: Internal classes
Slot, style-enabled: Exported classes
Slot, sweep: Internal classes
Slot, texture-on-viewport: Exported classes
Slot, tile: Exported classes
Slot, tile-padding-horizontal: Exported classes
Slot, tile-padding-vertical: Exported classes
Slot, tooltip-source: Exported classes
Slot, touch-tap-threshold: Exported classes
Slot, unconst-iter: Exported classes
Slot, ungrabify-while-simulating: Exported classes
Slot, uniform-node-dimensions: Exported classes
Slot, user-const-iter: Exported classes
Slot, user-panning-enabled: Exported classes
Slot, user-zooming-enabled: Exported classes
Slot, wheel-sensitivity: Exported classes
Slot, z-index: Exported classes
Slot, zoom: Exported classes
Slot, zoom: Exported classes
Slot, zooming-enabled: Exported classes
spacing-factor: Internal classes
Special Variable, +module-name+: Internal special variables
Special Variable, +module-version+: Internal special variables
spotlight-padding: Exported classes
start-angle: Internal classes
style-enabled: Exported classes
sweep: Internal classes

T
texture-on-viewport: Exported classes
tile: Exported classes
tile-padding-horizontal: Exported classes
tile-padding-vertical: Exported classes
tooltip-source: Exported classes
touch-tap-threshold: Exported classes

U
unconst-iter: Exported classes
ungrabify-while-simulating: Exported classes
uniform-node-dimensions: Exported classes
user-const-iter: Exported classes
user-panning-enabled: Exported classes
user-zooming-enabled: Exported classes

W
wheel-sensitivity: Exported classes

Z
z-index: Exported classes
zoom: Exported classes
zoom: Exported classes
zooming-enabled: Exported classes

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A.4 Data types

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Index Entry  Section

A
animation-slots: Internal classes
avoid-overlap-slot: Internal classes

B
bounding-box-slot: Internal classes
breadth-first-layout: Exported classes

C
circle-layout: Exported classes
Class, animation-slots: Internal classes
Class, avoid-overlap-slot: Internal classes
Class, bounding-box-slot: Internal classes
Class, breadth-first-layout: Exported classes
Class, circle-layout: Exported classes
Class, cola-layout: Exported classes
Class, common-slots: Internal classes
Class, concentric-layout: Exported classes
Class, context-menu: Exported classes
Class, cose-layout: Exported classes
Class, cytoscape-widget: Exported classes
Class, dagre-layout: Exported classes
Class, element: Exported classes
Class, fcose-layout: Exported classes
Class, graph-layout: Exported classes
Class, gravity-slot: Internal classes
Class, grid-layout: Exported classes
Class, menu-command: Exported classes
Class, nesting-factor-slot: Internal classes
Class, node-dimensions-include-labels-slot: Internal classes
Class, null-layout: Exported classes
Class, num-iter-slot: Internal classes
Class, preset-layout: Exported classes
Class, radial-slots: Internal classes
Class, random-layout: Exported classes
Class, randomize-slot: Internal classes
Class, refresh-slot: Internal classes
Class, spacing-factor-slot: Internal classes
cola-layout: Exported classes
common-slots: Internal classes
concentric-layout: Exported classes
context-menu: Exported classes
cose-layout: Exported classes
cytoscape: The cytoscape package
cytoscape-clj: The cytoscape-clj system
cytoscape-widget: Exported classes

D
dagre-layout: Exported classes

E
element: Exported classes

F
fcose-layout: Exported classes

G
graph-layout: Exported classes
gravity-slot: Internal classes
grid-layout: Exported classes

M
menu-command: Exported classes

N
nesting-factor-slot: Internal classes
node-dimensions-include-labels-slot: Internal classes
null-layout: Exported classes
num-iter-slot: Internal classes

P
Package, cytoscape: The cytoscape package
preset-layout: Exported classes

R
radial-slots: Internal classes
random-layout: Exported classes
randomize-slot: Internal classes
refresh-slot: Internal classes

S
spacing-factor-slot: Internal classes
System, cytoscape-clj: The cytoscape-clj system

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