This is the umlisp-orf Reference Manual, generated automatically by Declt version 4.0 beta 2 "William Riker" on Tue Jul 15 06:59:18 2025 GMT+0.
umlisp-orf/umlisp-orf.asdumlisp-orf/package.lispumlisp-orf/data-structures.lispumlisp-orf/utils.lispumlisp-orf/sql.lispumlisp-orf/parse-macros.lispumlisp-orf/parse-2002.lispumlisp-orf/parse-common.lispumlisp-orf/create-sql.lispumlisp-orf/sql-classes.lispumlisp-orf/classes.lispumlisp-orf/class-support.lispumlisp-orf/composite.lispThe main system appears first, followed by any subsystem dependency.
umlisp-orfclsql (system).
clsql-postgresql-socket (system).
kmrcl (system).
hyperobject (system).
package.lisp (file).
data-structures.lisp (file).
utils.lisp (file).
sql.lisp (file).
parse-macros.lisp (file).
parse-2002.lisp (file).
parse-common.lisp (file).
create-sql.lisp (file).
sql-classes.lisp (file).
classes.lisp (file).
class-support.lisp (file).
composite.lisp (file).
Files are sorted by type and then listed depth-first from the systems components trees.
umlisp-orf/umlisp-orf.asdumlisp-orf/package.lispumlisp-orf/data-structures.lispumlisp-orf/utils.lispumlisp-orf/sql.lispumlisp-orf/parse-macros.lispumlisp-orf/parse-2002.lispumlisp-orf/parse-common.lispumlisp-orf/create-sql.lispumlisp-orf/sql-classes.lispumlisp-orf/classes.lispumlisp-orf/class-support.lispumlisp-orf/composite.lispumlisp-orf/data-structures.lisppackage.lisp (file).
umlisp-orf (system).
print-object (method).
print-object (method).
*lex-path* (special variable).
*meta-path* (special variable).
*net-path* (special variable).
*umls-cols* (special variable).
*umls-files* (special variable).
*umls-path* (special variable).
av (reader method).
(setf av) (writer method).
bts (reader method).
(setf bts) (writer method).
cls (reader method).
(setf cls) (writer method).
cmax (reader method).
(setf cmax) (writer method).
cmin (reader method).
(setf cmin) (writer method).
col (reader method).
(setf col) (writer method).
custom-value-fun (reader method).
(setf custom-value-fun) (writer method).
datatype (reader method).
(setf datatype) (writer method).
des (reader method).
des (reader method).
(setf des) (writer method).
(setf des) (writer method).
dty (reader method).
(setf dty) (writer method).
fields (reader method).
(setf fields) (writer method).
fil (reader method).
fil (reader method).
(setf fil) (writer method).
(setf fil) (writer method).
fmt (reader method).
(setf fmt) (writer method).
parse-fun (reader method).
(setf parse-fun) (writer method).
quote-str (reader method).
(setf quote-str) (writer method).
ref (reader method).
(setf ref) (writer method).
rws (reader method).
(setf rws) (writer method).
sqltype (reader method).
(setf sqltype) (writer method).
table (reader method).
(setf table) (writer method).
ucol (class).
ucols (reader method).
(setf ucols) (writer method).
ufile (class).
umls-path! (function).
umlisp-orf/utils.lispdata-structures.lisp (file).
umlisp-orf (system).
find-ustr-in-ucon (function).
find-ustr-in-uterm (function).
find-uterm-in-ucon (function).
parse-cui (function).
parse-eui (function).
parse-lui (function).
parse-sui (function).
parse-tui (function).
+cuisui-scale+ (constant).
decompose-cuisui (function).
def-metaclass-reader (macro).
def-metaclass-reader-car (macro).
make-cuilui (function).
make-cuisui (function).
parse-ui (function).
umlisp-orf/sql.lisputils.lisp (file).
umlisp-orf (system).
*umls-sql-db* (special variable).
mutex-sql-execute (function).
mutex-sql-query (function).
sql-execute (function).
sql-query (function).
umls-sql-db! (function).
umls-sql-host! (function).
umls-sql-passwd! (function).
umls-sql-type! (function).
umls-sql-user! (function).
with-mutex-sql (macro).
with-sql-connection (macro).
*umls-sql-host* (special variable).
*umls-sql-passwd* (special variable).
*umls-sql-type* (special variable).
*umls-sql-user* (special variable).
+default-umls-db+ (special variable).
+umls-sql-map+ (special variable).
lookup-db-name (function).
sql (function).
sql-connect (function).
sql-disconnect (function).
sql-disconnect-pooled (function).
umls-sql (function).
umls-sql-db (function).
umls-sql-host (function).
umls-sql-passwd (function).
umls-sql-type (function).
umls-sql-user (function).
umlisp-orf/parse-macros.lispsql.lisp (file).
umlisp-orf (system).
with-buffered-umls-file (macro).
with-buffered2-umls-file (macro).
with-umls-file (macro).
umlisp-orf/parse-2002.lispparse-macros.lisp (file).
umlisp-orf (system).
*preparse-hash-init?* (special variable).
+col-datatypes+ (special variable).
+custom-cols+ (special variable).
+custom-index-cols+ (special variable).
+custom-tables+ (special variable).
+index-cols+ (special variable).
buffered-ensure-preparse (function).
cui-lrl (function).
cuisui-lrl (function).
ensure-preparse (function).
gen-ucols (function).
gen-ucols-custom (function).
gen-ucols-generic (function).
gen-ucols-meta (function).
gen-ufiles (function).
gen-ufiles-custom (function).
gen-ufiles-generic (function).
lui-lrl (function).
make-preparse-hash-table (function).
pfstr-hash (function).
sab-srl (function).
set-lrl-hash (function).
umlisp-orf/parse-common.lispparse-2002.lisp (file).
umlisp-orf (system).
add-ucols (function).
add-ufiles (function).
copy-or-new-ucol (function).
datatype-for-colname (function).
ensure-col-in-columns (function).
ensure-compiled-fun (function).
ensure-field-lengths (function).
ensure-ucol-datatype (function).
ensure-ucols+ufiles (function).
escape-column-name (function).
file-field-lengths (function).
find-ucol (function).
find-ucol-of-colname (function).
find-ucols-for-ufile (function).
find-ufile (function).
make-empty-ucol (function).
make-ucol (function).
make-ucol-for-column (function).
make-ufile (function).
read-umls-line (function).
ufiles-field-lengths (function).
ufiles-to-measure (function).
umls-field-string-to-list (function).
umls-pathname (function).
umlisp-orf/create-sql.lispparse-common.lisp (file).
umlisp-orf (system).
create-all-tables-cmdfile (function).
create-custom-table-cmd (function).
create-index-cmd (function).
create-table-cmd (function).
create-umls-db (function).
create-umls-db-by-insert (function).
custom-col-value (function).
custom-col-values (function).
custom-colnames-for-filename (function).
custom-ucols-for-file (function).
display-waste (function).
drop-index-cmd (function).
find-custom-col (function).
find-custom-cols-for-filename (function).
insert-col-value (function).
insert-values-cmd (function).
make-noneng-index-file (function).
make-usrl (function).
max-umls-field (function).
max-umls-row (function).
mysql-copy-cmd (function).
noneng-lang-index-files (function).
pg-copy-cmd (function).
remove-custom-cols (function).
sql-create-custom-tables (function).
sql-create-indexes (function).
sql-create-special-tables (function).
sql-create-tables (function).
sql-drop-tables (function).
sql-insert-all-values (function).
sql-insert-values (function).
translate-all-files (function).
translate-files (function).
translate-line (function).
translate-umls-file (function).
umls-fixed-size-waste (function).
umlisp-orf/sql-classes.lispsql.lisp (file).
umlisp-orf (system).
*current-srl* (special variable).
find-brel-rel (function).
find-bsab-all (function).
find-bsab-sab (function).
find-btty-all (function).
find-btty-tty (function).
find-cui-max (function).
find-cui-normalized-word (function).
find-cui-ucon-all (function).
find-cui2-urel-cui (function).
find-labr-bas (function).
find-labr-eui (function).
find-lagr-eui (function).
find-lcmp-eui (function).
find-lexterm-eui (function).
find-lexterm-word (function).
find-lmod-eui (function).
find-lnom-eui (function).
find-lprn-eui (function).
find-lprp-eui (function).
find-lspl-eui (function).
find-ltrm-eui (function).
find-ltyp-eui (function).
find-lui-normalized-word (function).
find-lwd-wrd (function).
find-pfstr-cui (function).
find-sdef-ui (function).
find-sstr-rl (function).
find-sstr-styrl (function).
find-sstre1-ui (function).
find-sstre1-ui2 (function).
find-string-sui (function).
find-sui-normalized-word (function).
find-uatx-cui (function).
find-ucoc-cui (function).
find-ucoc-cui2 (function).
find-ucon-all (function).
find-ucon-coc-cui2 (function).
find-ucon-cui (function).
find-ucon-cui-sans-pfstr (function).
find-ucon-cuisui (function).
find-ucon-lui (function).
find-ucon-multiword (function).
find-ucon-normalized-word (function).
find-ucon-rel-cui2 (function).
find-ucon-str (function).
find-ucon-sui (function).
find-ucon-tui (function).
find-ucon-word (function).
find-ucxt-cuisui (function).
find-udef-cui (function).
find-ulo-cui (function).
find-urel-cui (function).
find-urel-cui2 (function).
find-usab-all (function).
find-usab-rsab (function).
find-usab-vsab (function).
find-usat-ui (function).
find-uso-cuisui (function).
find-usrl-all (function).
find-ustats-all (function).
find-ustats-srl (function).
find-ustr-all (function).
find-ustr-cuilui (function).
find-ustr-cuisui (function).
find-ustr-multiword (function).
find-ustr-normalized-word (function).
find-ustr-sab (function).
find-ustr-sui (function).
find-ustr-word (function).
find-usty-all (function).
find-usty-cui (function).
find-usty-sty (function).
find-usty-tui (function).
find-usty-word (function).
find-uterm-cui (function).
find-uterm-cuilui (function).
find-uterm-lui (function).
find-uterm-multiword (function).
find-uterm-normalized-word (function).
find-uterm-word (function).
map-ucon-all (function).
collect-umlisp-query (macro).
collect-umlisp-query-eval (macro).
current-srl (function).
current-srl! (function).
ensure-cui-integer (macro).
ensure-eui-integer (macro).
ensure-lui-integer (macro).
ensure-sui-integer (macro).
ensure-tui-integer (macro).
find-count-table (function).
find-sstre2-sty (function).
find-ucon-all2 (function).
find-ucon-noneng-word (function).
find-uobj-multiword (function).
find-usab-by-key (function).
find-ustr-noneng-word (function).
insert-ustats (function).
insert-ustats-count (function).
make-ustats (function).
query-string (macro).
query-string-eval (function).
sort-score-pfstr-str (function).
sort-score-umlsclass-str (function).
sort-score-ustr-str (function).
umlisp-query (macro).
umlisp-query-eval (macro).
umlisp-orf/classes.lispsql-classes.lisp (file).
umlisp-orf (system).
atn (reader method).
atn (reader method).
atv (reader method).
bas (reader method).
bas (reader method).
bas (reader method).
bas (reader method).
bas (reader method).
bas (reader method).
bas (reader method).
bas (reader method).
bas (reader method).
bas (reader method).
bas2 (reader method).
bas2 (reader method).
coa (reader method).
cof (reader method).
cot (reader method).
cui (reader method).
cui (reader method).
cui (reader method).
cui (reader method).
cui (reader method).
cui1 (reader method).
cui1 (reader method).
cui2 (reader method).
cui2 (reader method).
cui2 (reader method).
cuilist (reader method).
def (reader method).
def (reader method).
eui (reader method).
eui (reader method).
eui (reader method).
eui (reader method).
eui (reader method).
eui (reader method).
eui (reader method).
eui (reader method).
eui (reader method).
eui (reader method).
eui (reader method).
eui2 (reader method).
eui2 (reader method).
fr (reader method).
hcd (reader method).
isn (reader method).
labr (class).
lagr (class).
lat (reader method).
lat (reader method).
lat (reader method).
lat (reader method).
lat (reader method).
lcmp (class).
lexterm (class).
lmod (class).
lnom (class).
lprn (class).
lprp (class).
lrl (reader method).
lrl (reader method).
lrl (reader method).
lrl (reader method).
lspl (class).
ltrm (class).
ltyp (class).
lui (reader method).
lui (reader method).
lui (reader method).
lui (reader method).
lwd (class).
mg (reader method).
nstr (reader method).
pfstr (reader method).
pfstr2 (reader method).
pfstr2 (reader method).
rank (reader method).
rcui (reader method).
rel (reader method).
rel (reader method).
rel (reader method).
rela (reader method).
rela (reader method).
rela (reader method).
rl (reader method).
rl (reader method).
rsab (reader method).
s#atx (reader method).
s#coc (reader method).
s#cxt (reader method).
s#def (reader method).
s#lo (reader method).
s#rel (reader method).
s#sat (reader method).
s#sat (reader method).
s#sat (reader method).
s#so (reader method).
s#str (reader method).
s#sty (reader method).
s#term (reader method).
sab (reader method).
sab (reader method).
sab (reader method).
sab (reader method).
sab (reader method).
sab (reader method).
sab (reader method).
sab (reader method).
sab (reader method).
sab (reader method).
sab (reader method).
sdef (class).
sl (reader method).
sl (reader method).
sna (reader method).
soc (reader method).
soui (reader method).
srl (reader method).
srl (reader method).
srl (reader method).
srl (reader method).
sstr (class).
sstre1 (class).
sstre2 (class).
str (reader method).
str (reader method).
str (reader method).
stt (reader method).
sty (reader method).
sty (reader method).
sty2 (reader method).
sui (reader method).
sui (reader method).
sui (reader method).
sui (reader method).
supres (reader method).
ts (reader method).
tty (reader method).
tty (reader method).
tty (reader method).
tui (reader method).
uatx (class).
ucoc (class).
ucon (class).
ucxt (class).
udef (class).
ui (reader method).
ui (reader method).
ui2 (reader method).
ui3 (reader method).
ulo (class).
umlsclass (class).
un (reader method).
un (reader method).
urank (class).
urel (class).
usab (class).
usat (class).
uso (class).
usrl (class).
ustr (class).
usty (class).
uterm (class).
uxns (class).
uxnw (class).
uxw (class).
vcui (reader method).
vsab (reader method).
wd (reader method).
wd (reader method).
abr (reader method).
abr (reader method).
agr (reader method).
atnl (reader method).
atx (reader method).
batn (class).
brel (class).
bsab (class).
btty (class).
cas (reader method).
cenc (reader method).
cfr (reader method).
cit (reader method).
code (reader method).
code (reader method).
code (reader method).
com (reader method).
cuisui (reader method).
curver (reader method).
cxl (reader method).
cxn (reader method).
cxs (reader method).
cxty (reader method).
euilist (reader method).
ex (reader method).
fea (reader method).
fea (reader method).
fea (reader method).
gen (reader method).
gnd (reader method).
hits (reader method).
hits (reader method).
hits (reader method).
hits (reader method).
hits (reader method).
imeta (reader method).
ls (reader method).
name (reader method).
name (reader method).
name (reader method).
num (reader method).
nwd (reader method).
pos (reader method).
psnmod (reader method).
qnt (reader method).
rh (reader method).
rin (reader method).
rmeta (reader method).
rnk (reader method).
rt (reader method).
s#abr (reader method).
s#agr (reader method).
s#cmp (reader method).
s#mod (reader method).
s#nom (reader method).
s#prn (reader method).
s#prp (reader method).
s#spl (reader method).
s#trm (reader method).
s#typ (reader method).
sabin (reader method).
sca (reader method).
sca (reader method).
sca (reader method).
sca (reader method).
sca (reader method).
sca (reader method).
sca2 (reader method).
scc (reader method).
sf (reader method).
slc (reader method).
son (reader method).
spv (reader method).
stnrtn (reader method).
styrl (reader method).
styrl (reader method).
styrl2 (reader method).
sver (reader method).
tfr (reader method).
ttyl (reader method).
typ (reader method).
ustats (class).
uxnw-cuilist (reader method).
uxw-noneng (class).
vend (reader method).
vstart (reader method).
wrd (reader method).
wrd (reader method).
xc (reader method).
umlisp-orf/class-support.lispclasses.lisp (file).
umlisp-orf (system).
cui-p (function).
cxt-ancestors (generic function).
display-con (function).
display-str (function).
display-term (function).
english-term-p (function).
eui-p (function).
filter-urels-by-rel (function).
fmt-cui (generic function).
fmt-eui (generic function).
fmt-lui (generic function).
fmt-sui (generic function).
fmt-tui (generic function).
lat-abbr-info (function).
lui-p (function).
mesh-number (generic function).
pf-ustr (generic function).
pfstr (method).
pfstr (method).
print-umlsclass (function).
rel-abbr-info (function).
remove-english-terms (function).
remove-non-english-terms (function).
stt-abbr-info (function).
sui-p (function).
suistr (generic function).
tui-p (function).
ucon-ancestors (function).
ucon-has-tui (function).
ucon-parents (function).
ucon-ustrs (function).
*is-lat-table-init* (special variable).
*is-rel-table-init* (special variable).
*lat-info-table* (special variable).
*rel-info-table* (special variable).
+language-abbreviations+ (special variable).
+relationship-abbreviations+ (special variable).
check-ui (function).
define-lookup-display (macro).
english-term-filter (function).
umlisp-orf/composite.lispsql-classes.lisp (file).
umlisp-orf (system).
find-ucon2-coc-str&sty (function).
find-ucon2-coc-tui (function).
find-ucon2-rel-str&sty (function).
find-ucon2-rel-tui (function).
find-ucon2-str&sty (function).
find-ucon2-tui (function).
find-ucon2_freq-coc-tui (function).
find-ucon2_freq-coc-tui-all (function).
find-ucon2_freq-rel-tui-all (function).
find-ucon2_freq-tui-all (function).
find-usrl_freq-all (function).
find-usty_freq-all (function).
tui-disease-or-syndrome (function).
tui-finding (function).
tui-sign-or-symptom (function).
ucon-is-tui? (function).
ucon_freq (class).
usrl_freq (class).
ustr_freq (class).
usty_freq (class).
freq (reader method).
(setf freq) (writer method).
freq (class).
Packages are listed by definition order.
umlisp-orfu1
common-lisp.
hyperobject.
kmrcl.
*current-srl* (special variable).
*umls-sql-db* (special variable).
atn (generic reader).
atv (generic reader).
bas (generic reader).
bas2 (generic reader).
coa (generic reader).
cof (generic reader).
cot (generic reader).
cui (generic reader).
cui-p (function).
cui1 (generic reader).
cui2 (generic reader).
cuilist (generic reader).
cxt-ancestors (generic function).
def (generic reader).
display-con (function).
display-str (function).
display-term (function).
english-term-p (function).
eui (generic reader).
eui-p (function).
eui2 (generic reader).
filter-urels-by-rel (function).
find-brel-rel (function).
find-bsab-all (function).
find-bsab-sab (function).
find-btty-all (function).
find-btty-tty (function).
find-cui-max (function).
find-cui-normalized-word (function).
find-cui-ucon-all (function).
find-cui2-urel-cui (function).
find-labr-bas (function).
find-labr-eui (function).
find-lagr-eui (function).
find-lcmp-eui (function).
find-lexterm-eui (function).
find-lexterm-word (function).
find-lmod-eui (function).
find-lnom-eui (function).
find-lprn-eui (function).
find-lprp-eui (function).
find-lspl-eui (function).
find-ltrm-eui (function).
find-ltyp-eui (function).
find-lui-normalized-word (function).
find-lwd-wrd (function).
find-pfstr-cui (function).
find-sdef-ui (function).
find-sstr-rl (function).
find-sstr-styrl (function).
find-sstre1-ui (function).
find-sstre1-ui2 (function).
find-string-sui (function).
find-sui-normalized-word (function).
find-uatx-cui (function).
find-ucoc-cui (function).
find-ucoc-cui2 (function).
find-ucon-all (function).
find-ucon-coc-cui2 (function).
find-ucon-cui (function).
find-ucon-cui-sans-pfstr (function).
find-ucon-cuisui (function).
find-ucon-lui (function).
find-ucon-multiword (function).
find-ucon-normalized-word (function).
find-ucon-rel-cui2 (function).
find-ucon-str (function).
find-ucon-sui (function).
find-ucon-tui (function).
find-ucon-word (function).
find-ucon2-coc-str&sty (function).
find-ucon2-coc-tui (function).
find-ucon2-rel-str&sty (function).
find-ucon2-rel-tui (function).
find-ucon2-str&sty (function).
find-ucon2-tui (function).
find-ucon2_freq-coc-tui (function).
find-ucon2_freq-coc-tui-all (function).
find-ucon2_freq-rel-tui-all (function).
find-ucon2_freq-tui-all (function).
find-ucxt-cuisui (function).
find-udef-cui (function).
find-ulo-cui (function).
find-urel-cui (function).
find-urel-cui2 (function).
find-usab-all (function).
find-usab-rsab (function).
find-usab-vsab (function).
find-usat-ui (function).
find-uso-cuisui (function).
find-usrl-all (function).
find-usrl_freq-all (function).
find-ustats-all (function).
find-ustats-srl (function).
find-ustr-all (function).
find-ustr-cuilui (function).
find-ustr-cuisui (function).
find-ustr-in-ucon (function).
find-ustr-in-uterm (function).
find-ustr-multiword (function).
find-ustr-normalized-word (function).
find-ustr-sab (function).
find-ustr-sui (function).
find-ustr-word (function).
find-usty-all (function).
find-usty-cui (function).
find-usty-sty (function).
find-usty-tui (function).
find-usty-word (function).
find-usty_freq-all (function).
find-uterm-cui (function).
find-uterm-cuilui (function).
find-uterm-in-ucon (function).
find-uterm-lui (function).
find-uterm-multiword (function).
find-uterm-normalized-word (function).
find-uterm-word (function).
fmt-cui (generic function).
fmt-eui (generic function).
fmt-lui (generic function).
fmt-sui (generic function).
fmt-tui (generic function).
fr (generic reader).
hcd (generic reader).
isn (generic reader).
labr (class).
lagr (class).
lat (generic reader).
lat-abbr-info (function).
lcmp (class).
lexterm (class).
lmod (class).
lnom (class).
lprn (class).
lprp (class).
lrl (generic reader).
lspl (class).
ltrm (class).
ltyp (class).
lui (generic reader).
lui-p (function).
lwd (class).
map-ucon-all (function).
mesh-number (generic function).
mg (generic reader).
mutex-sql-execute (function).
mutex-sql-query (function).
nstr (generic reader).
parse-cui (function).
parse-eui (function).
parse-lui (function).
parse-sui (function).
parse-tui (function).
pf-ustr (generic function).
pfstr (generic function).
pfstr2 (generic reader).
print-umlsclass (function).
rank (generic reader).
rcui (generic reader).
rel (generic reader).
rel-abbr-info (function).
rela (generic reader).
remove-english-terms (function).
remove-non-english-terms (function).
rl (generic reader).
rsab (generic reader).
s#atx (generic reader).
s#coc (generic reader).
s#cxt (generic reader).
s#def (generic reader).
s#lo (generic reader).
s#rel (generic reader).
s#sat (generic reader).
s#so (generic reader).
s#str (generic reader).
s#sty (generic reader).
s#term (generic reader).
sab (generic reader).
sdef (class).
sl (generic reader).
sna (generic reader).
soc (generic reader).
soui (generic reader).
sql-execute (function).
sql-query (function).
srl (generic reader).
sstr (class).
sstre1 (class).
sstre2 (class).
str (generic reader).
stt (generic reader).
stt-abbr-info (function).
sty (generic reader).
sty2 (generic reader).
sui (generic reader).
sui-p (function).
suistr (generic function).
supres (generic reader).
ts (generic reader).
tty (generic reader).
tui (generic reader).
tui-disease-or-syndrome (function).
tui-finding (function).
tui-p (function).
tui-sign-or-symptom (function).
uatx (class).
ucoc (class).
ucon (class).
ucon-ancestors (function).
ucon-has-tui (function).
ucon-is-tui? (function).
ucon-parents (function).
ucon-ustrs (function).
ucon_freq (class).
ucxt (class).
udef (class).
ui (generic reader).
ui2 (generic reader).
ui3 (generic reader).
ulo (class).
umls-sql-db! (function).
umls-sql-host! (function).
umls-sql-passwd! (function).
umls-sql-type! (function).
umls-sql-user! (function).
umlsclass (class).
un (generic reader).
urank (class).
urel (class).
usab (class).
usat (class).
uso (class).
usrl (class).
usrl_freq (class).
ustr (class).
ustr_freq (class).
usty (class).
usty_freq (class).
uterm (class).
uxns (class).
uxnw (class).
uxw (class).
vcui (generic reader).
vsab (generic reader).
wd (generic reader).
with-mutex-sql (macro).
with-sql-connection (macro).
*is-lat-table-init* (special variable).
*is-rel-table-init* (special variable).
*lat-info-table* (special variable).
*lex-path* (special variable).
*meta-path* (special variable).
*net-path* (special variable).
*preparse-hash-init?* (special variable).
*rel-info-table* (special variable).
*umls-cols* (special variable).
*umls-files* (special variable).
*umls-path* (special variable).
*umls-sql-host* (special variable).
*umls-sql-passwd* (special variable).
*umls-sql-type* (special variable).
*umls-sql-user* (special variable).
+col-datatypes+ (special variable).
+cuisui-scale+ (constant).
+custom-cols+ (special variable).
+custom-index-cols+ (special variable).
+custom-tables+ (special variable).
+default-umls-db+ (special variable).
+index-cols+ (special variable).
+language-abbreviations+ (special variable).
+relationship-abbreviations+ (special variable).
+umls-sql-map+ (special variable).
abr (generic reader).
add-ucols (function).
add-ufiles (function).
agr (generic reader).
atnl (generic reader).
atx (generic reader).
av (generic reader).
(setf av) (generic writer).
batn (class).
brel (class).
bsab (class).
bts (generic reader).
(setf bts) (generic writer).
btty (class).
buffered-ensure-preparse (function).
cas (generic reader).
cenc (generic reader).
cfr (generic reader).
check-ui (function).
cit (generic reader).
cls (generic reader).
(setf cls) (generic writer).
cmax (generic reader).
(setf cmax) (generic writer).
cmin (generic reader).
(setf cmin) (generic writer).
code (generic reader).
col (generic reader).
(setf col) (generic writer).
collect-umlisp-query (macro).
collect-umlisp-query-eval (macro).
com (generic reader).
copy-or-new-ucol (function).
create-all-tables-cmdfile (function).
create-custom-table-cmd (function).
create-index-cmd (function).
create-table-cmd (function).
create-umls-db (function).
create-umls-db-by-insert (function).
cui-lrl (function).
cuisui (generic reader).
cuisui-lrl (function).
current-srl (function).
current-srl! (function).
curver (generic reader).
custom-col-value (function).
custom-col-values (function).
custom-colnames-for-filename (function).
custom-ucols-for-file (function).
custom-value-fun (generic reader).
(setf custom-value-fun) (generic writer).
cxl (generic reader).
cxn (generic reader).
cxs (generic reader).
cxty (generic reader).
datatype (generic reader).
(setf datatype) (generic writer).
datatype-for-colname (function).
decompose-cuisui (function).
def-metaclass-reader (macro).
def-metaclass-reader-car (macro).
define-lookup-display (macro).
des (generic reader).
(setf des) (generic writer).
display-waste (function).
drop-index-cmd (function).
dty (generic reader).
(setf dty) (generic writer).
english-term-filter (function).
ensure-col-in-columns (function).
ensure-compiled-fun (function).
ensure-cui-integer (macro).
ensure-eui-integer (macro).
ensure-field-lengths (function).
ensure-lui-integer (macro).
ensure-preparse (function).
ensure-sui-integer (macro).
ensure-tui-integer (macro).
ensure-ucol-datatype (function).
ensure-ucols+ufiles (function).
escape-column-name (function).
euilist (generic reader).
ex (generic reader).
fea (generic reader).
fields (generic reader).
(setf fields) (generic writer).
fil (generic reader).
(setf fil) (generic writer).
file-field-lengths (function).
find-count-table (function).
find-custom-col (function).
find-custom-cols-for-filename (function).
find-sstre2-sty (function).
find-ucol (function).
find-ucol-of-colname (function).
find-ucols-for-ufile (function).
find-ucon-all2 (function).
find-ucon-noneng-word (function).
find-ufile (function).
find-uobj-multiword (function).
find-usab-by-key (function).
find-ustr-noneng-word (function).
fmt (generic reader).
(setf fmt) (generic writer).
freq (generic reader).
(setf freq) (generic writer).
freq (class).
gen (generic reader).
gen-ucols (function).
gen-ucols-custom (function).
gen-ucols-generic (function).
gen-ucols-meta (function).
gen-ufiles (function).
gen-ufiles-custom (function).
gen-ufiles-generic (function).
gnd (generic reader).
hits (generic reader).
imeta (generic reader).
insert-col-value (function).
insert-ustats (function).
insert-ustats-count (function).
insert-values-cmd (function).
lookup-db-name (function).
ls (generic reader).
lui-lrl (function).
make-cuilui (function).
make-cuisui (function).
make-empty-ucol (function).
make-noneng-index-file (function).
make-preparse-hash-table (function).
make-ucol (function).
make-ucol-for-column (function).
make-ufile (function).
make-usrl (function).
make-ustats (function).
max-umls-field (function).
max-umls-row (function).
mysql-copy-cmd (function).
name (generic reader).
noneng-lang-index-files (function).
num (generic reader).
nwd (generic reader).
parse-fun (generic reader).
(setf parse-fun) (generic writer).
parse-ui (function).
pfstr-hash (function).
pg-copy-cmd (function).
pos (generic reader).
psnmod (generic reader).
qnt (generic reader).
query-string (macro).
query-string-eval (function).
quote-str (generic reader).
(setf quote-str) (generic writer).
read-umls-line (function).
ref (generic reader).
(setf ref) (generic writer).
remove-custom-cols (function).
rh (generic reader).
rin (generic reader).
rmeta (generic reader).
rnk (generic reader).
rt (generic reader).
rws (generic reader).
(setf rws) (generic writer).
s#abr (generic reader).
s#agr (generic reader).
s#cmp (generic reader).
s#mod (generic reader).
s#nom (generic reader).
s#prn (generic reader).
s#prp (generic reader).
s#spl (generic reader).
s#trm (generic reader).
s#typ (generic reader).
sab-srl (function).
sabin (generic reader).
sca (generic reader).
sca2 (generic reader).
scc (generic reader).
set-lrl-hash (function).
sf (generic reader).
slc (generic reader).
son (generic reader).
sort-score-pfstr-str (function).
sort-score-umlsclass-str (function).
sort-score-ustr-str (function).
spv (generic reader).
sql (function).
sql-connect (function).
sql-create-custom-tables (function).
sql-create-indexes (function).
sql-create-special-tables (function).
sql-create-tables (function).
sql-disconnect (function).
sql-disconnect-pooled (function).
sql-drop-tables (function).
sql-insert-all-values (function).
sql-insert-values (function).
sqltype (generic reader).
(setf sqltype) (generic writer).
stnrtn (generic reader).
styrl (generic reader).
styrl2 (generic reader).
sver (generic reader).
table (generic reader).
(setf table) (generic writer).
tfr (generic reader).
translate-all-files (function).
translate-files (function).
translate-line (function).
translate-umls-file (function).
ttyl (generic reader).
typ (generic reader).
ucol (class).
ucols (generic reader).
(setf ucols) (generic writer).
ufile (class).
ufiles-field-lengths (function).
ufiles-to-measure (function).
umlisp-query (macro).
umlisp-query-eval (macro).
umls-field-string-to-list (function).
umls-fixed-size-waste (function).
umls-path! (function).
umls-pathname (function).
umls-sql (function).
umls-sql-db (function).
umls-sql-host (function).
umls-sql-passwd (function).
umls-sql-type (function).
umls-sql-user (function).
ustats (class).
uxnw-cuilist (generic reader).
uxw-noneng (class).
vend (generic reader).
vstart (generic reader).
with-buffered-umls-file (macro).
with-buffered2-umls-file (macro).
with-umls-file (macro).
wrd (generic reader).
xc (generic reader).
Definitions are sorted by export status, category, package, and then by lexicographic order.
Check if a string is a CUI
Returns two values: T/NIL if term is english and T/NIL if obj is a TERM
Return list of cui that match word, optionally use SQL’s LIKE syntax
Return list of CUIs for all ucons
Return a list of urel for cui
Return list of cui that match word, optionally use SQL’s LIKE syntax
Find preferred string for a cui
Return the string associated with sui
Return list of cui that match word, optionally use SQL’s LIKE syntax
Return a list of uatx for cui
Return a list of ucoc for cui
Return a list of ucoc for cui2
Return list of all ucon’s
List of ucon with co-occurance cui2
Find ucon for a cui
Find ucon for a cui
Find ucon for cui/sui
Find list of ucon for lui
Return list of ucons that match word, optionally use SQL’s LIKE syntax
Find ucon that are exact match for str
Find list of ucon for sui
Find list of ucon for tui
Return list of ucons that match word. Optionally, use SQL’s LIKE syntax
Find all ucons that are a co-occuring concept for concept named str and that have semantic type of sty
Return list of ucon’s that have co-occuring concepts of semantic type tui
Find all ucons that are a relationship to concept named str and that have semantic type of sty
Return list of ucon’s that have related concepts to ucon and semantic type tui
Call lookup-func for ucon and usty for given str and sty
Returns a list of related ucons that have specific tui
Return sorted list of tuples with ucon and freq that have co-occuring concepts of semantic type tui
Sorted list of ucon_freq with semantic type tui that are rel’s of ucons with semantic type tui
Return sorted list of all ucon2 that have a semantic type tui with ucon that is also has sty of tui
Return a list of udefs for cui
Return a list of ulo for cui
Return a list of urel for cui
Return a list of urel for cui2
Find usab for a key
Find usab for rsab
Find usab for vsab
Return list of all ustr’s
Return a list of ustr for cui/lui
Return the single ustr for cuisui
Return list of ustrs that match word
Return the list of ustr for sab
Return the list of ustr for sui
Return list of ustrs that match word
Return list of usty’s for all semantic types
Return a list of usty for cui
Find usty for a sty
Find usty for tui
Return a list of usty that match word
Return a list of uterm for cui
Return single uterm for cui/lui
Return a list of uterm for lui
Return list of uterms that match word
Return list of uterms that match word
Check if a string is a LUI
Map a function over all ucon’s
Check if a string is a SUI
Returns a list of ancestor lists for a concept
Returns T if UCON has a semantic type of TUI.
Returns t if ucon has a semantic type of tui
Return lists of strings for a concept
uxw-noneng)) ¶automatically generated reader method
cui.
uxw-noneng)) ¶automatically generated reader method
lat.
uxw-noneng)) ¶automatically generated reader method
lrl.
uxw-noneng)) ¶automatically generated reader method
lui.
ustats)) ¶automatically generated reader method
srl.
uxw-noneng)) ¶automatically generated reader method
sui.
hyperobject.
lat.
nwd.
uxnw-cuilist.
:cuilist
This slot is read-only.
List of meta column structures. Used when parsing text files.
List of umls file structures. Used when parsing text files.
Path for base of UMLS data files
SQL data types for each non-string column
Custom columns to create.(filename, col, sqltype, value-func).
Indexes to custom tables
Custom tables to create
Columns in files to index
Create function for reading slot of metaclass
Create function for reading slot of metaclass
Defines functions for looking up and displaying objects
Query the UMLisp database. Return a list of umlisp objects whose name is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS
Query the UMLisp database. Return a list of umlisp objects whose name is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS
Opens a UMLS and processes each parsed line with (body) argument
Opens a UMLS and processes each parsed line with (body) argument
Opens a UMLS and processes each parsed line with (body) argument
Adds a ucol or list of ucols to *umls-cols*. Returns input value.
Adds a ufile or list of ufiles to *umls-filess*. Returns input value.
Return sql commands to create all tables. Not need for automated SQL import
Return SQL command to create a custom table
Return sql create index command
Return sql command to create a table
SQL Databases: initializes entire database via SQL copy commands. This is much faster that using create-umls-db-insert.
SQL Databases: initializes entire database via SQL insert commands
Returns a list of string column values for SQL inserts for custom columns
Return datatype for column name
Returns the CUI and SUI of a cuisui number
Return sql create index command
Retrns NIL if object is a term and not english
Ensure that a function is compiled
Initial colstruct field lengths for files that don’t have a measurement. Currently, these are the LEX and NET files.
Add data type information to column
Initialize all UMLS file and column structures if not already initialized
Returns a list of FILENAME MAX AV
Returns list of umls-col structure for a column name and a filename
Returns list of umls-col structure for a column name and a filename
Returns list of umls-cols for a file structure
Return list of all ucon’s
Return list of ucons that match non-english word
Returns umls-file structure for a filename
Find usab for a key
Return list of ustrs that match non-english word
Initialize umls columns for custom columns
Initialize for generic (LEX/NET) columns
Initialize all umls columns
Initialize all LEX file structures
Return sql insert command for a row of values
Make non-english index file
Return length of longest field
Return length of longest row
Return mysql copy statement for a file
Return integer value for a UMLS unique identifier.
Return postgresql copy statement for a file
Read a line from a UMLS stream, split into fields
Remove custom cols from a list col umls-cols
Set the least restrictive level in hash table
Return list of sorted and scored ucons. Score by match of str to ucon-pfstr
Sort a list of objects based on scoring to a string
Return list of sorted and scored ucons. Score by match of str to ucon-pfstr
Connect to UMLS database, automatically used pooled connections
SQL Databases: create all custom tables
SQL Databases: create all indexes
SQL Databases: create all tables
Disconnect from UMLS database, but put connection back into pool
SQL Databases: drop all tables
SQL Databases: inserts all values for all files
SQL Databases: inserts all values for a file
Copy translated files and return postgresql copy commands to import
Translate a umls file into a format suitable for sql copy cmd
Translate a single line for sql output
Translate a umls file into a format suitable for sql copy cmd
Returns a list of lists of containing (FILE MAX AV)
Returns a list of ufiles to measure
Converts a comma delimited list of fields into a list of field names. Will
append a unique number (starting at 2) onto a column name that is repeated in the list
Display storage waste if using all fixed size storage
Return pathname for a umls filename with an optional extension
Bonus ATN file
| Initarg | Value |
|---|---|
:sab | nil |
:atn | nil |
Bonus REL file
| Initarg | Value |
|---|---|
:sab | nil |
:sl | nil |
:rel | nil |
:rela | nil |
:hits | nil |
Bonus SAB file
| Initarg | Value |
|---|---|
:sab | nil |
:name | nil |
:hits | nil |
Bonus TTY file
| Initarg | Value |
|---|---|
:tty | nil |
:name | nil |
:hits | nil |
UMLS column
(setf av).
av.
(setf cmax).
cmax.
(setf cmin).
cmin.
(setf col).
col.
(setf custom-value-fun).
custom-value-fun.
(setf datatype).
datatype.
(setf des).
des.
(setf dty).
dty.
(setf fil).
fil.
(setf parse-fun).
parse-fun.
print-object.
(setf quote-str).
quote-str.
(setf ref).
ref.
(setf sqltype).
sqltype.
| Initarg | Value |
|---|---|
:col | nil |
:des | nil |
:ref | nil |
:min | nil |
:av | nil |
:max | nil |
:fil | nil |
:sqltype | nil |
:dty | nil |
:parse-fun | nil |
:datatype | nil |
:custom-value-fun | nil |
:sqltype
:parse-fun
:quote-str
:datatype
:custom-value-fun
UMLS File
(setf bts).
bts.
(setf cls).
cls.
(setf des).
des.
(setf fields).
fields.
(setf fil).
fil.
(setf fmt).
fmt.
print-object.
(setf rws).
rws.
(setf table).
table.
(setf ucols).
ucols.
| Initarg | Value |
|---|---|
:fil | nil |
:table | nil |
:des | nil |
:fmt | nil |
:cls | nil |
:rws | nil |
:bts | nil |
:fields | nil |
:ucols | nil |
:table
:fields
:ucols
Custom Table: UMLS Database statistics.
| Initarg | Value |
|---|---|
:name | nil |
:hits | nil |
:srl | nil |
| Jump to: | (
A B C D E F G H I L M N P Q R S T U V W X |
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A B C D E F G H I L M N P Q R S T U V W X |
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+
A B C D E F G H I L M N P Q R S T U V W X |
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| Jump to: | *
+
A B C D E F G H I L M N P Q R S T U V W X |
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| Jump to: | B C D F L P S U |
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| Jump to: | B C D F L P S U |
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