The umlisp Reference Manual

3.1.1 umlisp/umlisp.asd

Source

umlisp.asd.

Parent Component

umlisp (system).

ASDF Systems

umlisp.

Packages

umlisp-system.

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3.1.2 umlisp/package.lisp

Source

umlisp.asd.

Parent Component

umlisp (system).

Packages

• umlisp-user.
• umlisp.

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3.1.3 umlisp/data-structures.lisp

Dependency

package.lisp (file).

Source

umlisp.asd.

Parent Component

umlisp (system).

Public Interface

• print-object (method).
• print-object (method).
• set-umls-path (function).

Internals

• *has-fixnum-class* (special variable).
• *lex-dir* (special variable).
• *lex-path* (special variable).
• *meta-dir* (special variable).
• *meta-path* (special variable).
• *net-dir* (special variable).
• *net-path* (special variable).
• *octet-sql-storage* (special variable).
• *release* (special variable).
• *umls-cols* (special variable).
• *umls-files* (special variable).
• *umls-path* (special variable).
• av (reader method).
• (setf av) (writer method).
• bts (reader method).
• (setf bts) (writer method).
• cls (reader method).
• (setf cls) (writer method).
• cmax (reader method).
• (setf cmax) (writer method).
• cmin (reader method).
• (setf cmin) (writer method).
• col (reader method).
• (setf col) (writer method).
• custom-value-fun (reader method).
• (setf custom-value-fun) (writer method).
• datatype (reader method).
• (setf datatype) (writer method).
• des (reader method).
• des (reader method).
• (setf des) (writer method).
• (setf des) (writer method).
• dir (reader method).
• (setf dir) (writer method).
• dty (reader method).
• (setf dty) (writer method).
• fields (reader method).
• (setf fields) (writer method).
• fil (reader method).
• fil (reader method).
• (setf fil) (writer method).
• (setf fil) (writer method).
• fmt (reader method).
• (setf fmt) (writer method).
• parse-fun (reader method).
• (setf parse-fun) (writer method).
• quote-str (reader method).
• (setf quote-str) (writer method).
• ref (reader method).
• (setf ref) (writer method).
• rws (reader method).
• (setf rws) (writer method).
• sqltype (reader method).
• (setf sqltype) (writer method).
• subdir (reader method).
• (setf subdir) (writer method).
• table (reader method).
• (setf table) (writer method).
• ucol (class).
• ucols (reader method).
• (setf ucols) (writer method).
• ufile (class).

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3.1.4 umlisp/utils.lisp

Dependency

data-structures.lisp (file).

Source

umlisp.asd.

Parent Component

umlisp (system).

Public Interface

• find-ustr-in-ucon (function).
• find-ustr-in-uterm (function).
• find-uterm-in-ucon (function).
• parse-cui (function).
• parse-eui (function).
• parse-lui (function).
• parse-sui (function).
• parse-tui (function).

Internals

• +cuisui-scale+ (constant).
• decompose-cuisui (function).
• def-metaclass-reader (macro).
• def-metaclass-reader-car (macro).
• make-cuilui (function).
• make-cuisui (function).
• parse-aui (function).
• parse-rui (function).
• parse-ui (function).

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3.1.5 umlisp/sql.lisp

Dependency

utils.lisp (file).

Source

umlisp.asd.

Parent Component

umlisp (system).

Public Interface

• *umls-sql-db* (special variable).
• set-umls-sql-db (function).
• set-umls-sql-host (function).
• set-umls-sql-passwd (function).
• set-umls-sql-type (function).
• set-umls-sql-user (function).
• sql-disconnect (function).
• sql-disconnect-pooled (function).
• umls-sql-db (function).
• umls-sql-host (function).
• umls-sql-passwd (function).
• umls-sql-type (function).
• umls-sql-user (function).
• with-sql-connection (macro).

Internals

• *umls-sql-host* (special variable).
• *umls-sql-passwd* (special variable).
• *umls-sql-type* (special variable).
• *umls-sql-user* (special variable).
• +default-umls-db+ (special variable).
• +umls-sql-map+ (special variable).
• lookup-db-name (function).
• mutex-sql-execute (function).
• mutex-sql-query (function).
• sql (function).
• sql-connect (function).
• sql-execute (function).
• sql-query (function).
• umls-connection-spec (function).
• umls-sql (function).
• with-mutex-sql (macro).

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3.1.6 umlisp/parse-macros.lisp

Dependency

sql.lisp (file).

Source

umlisp.asd.

Parent Component

umlisp (system).

Internals

• read-umls-line (function).
• source-files (function).
• with-buffered-reading-umls-file (macro).
• with-buffered-umls-file (macro).
• with-reading-umls-file (macro).
• with-umls-file (macro).
• with-umls-ufile (macro).

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3.1.7 umlisp/parse-rrf.lisp

Dependency

parse-macros.lisp (file).

Source

umlisp.asd.

Parent Component

umlisp (system).

Internals

• *preparse-hash-init?* (special variable).
• *vff-position-hash* (special variable).
• +col-datatypes+ (special variable).
• +custom-cols+ (special variable).
• +custom-index-cols+ (special variable).
• +custom-tables+ (special variable).
• +index-cols+ (special variable).
• clear-preparse-hash-tables (function).
• cui-lrl (function).
• cui-lrlus (function).
• cuisui-lrl (function).
• cuisui-lrlus (function).
• ensure-preparse (function).
• gen-ucols (function).
• gen-ucols-custom (function).
• gen-ucols-generic (function).
• gen-ucols-meta (function).
• gen-ufiles (function).
• gen-ufiles-custom (function).
• gen-ufiles-generic (function).
• lui-lrl (function).
• lui-lrlus (function).
• make-preparse-hash-table (function).
• sab-srl (function).
• sab-srlus (function).
• set-lrl-hash (function).
• srl-to-srlus (function).
• sui-lrl (function).
• sui-lrlus (function).
• vff (macro).

---

3.1.8 umlisp/parse-common.lisp

Dependency

parse-rrf.lisp (file).

Source

umlisp.asd.

Parent Component

umlisp (system).

Internals

• *sql-reserved-names* (special variable).
• add-ucols (function).
• add-ufiles (function).
• canonicalize-column-type (function).
• copy-or-new-ucol (function).
• datatype-for-colname (function).
• decompose-fil (function).
• ensure-col-in-columns (function).
• ensure-compiled-fun (function).
• ensure-field-lengths (function).
• ensure-ucol-datatype (function).
• ensure-ucols+ufiles (function).
• escape-column-name (function).
• file-field-lengths (function).
• filename-to-tablename (function).
• find-ucol (function).
• find-ucol-of-colname (function).
• find-ucols-for-ufile (function).
• find-ufile (function).
• make-empty-ucol (function).
• make-ucol (function).
• make-ucol-for-column (function).
• make-ufile (function).
• position-field-file (function).
• set-ucols-for-ufiles (function).
• sqlname (method).
• sqlname (method).
• sqlname (method).
• sqlname (method).
• ufile-pathname (function).
• ufiles-field-lengths (function).
• ufiles-to-measure (function).
• umls-field-string-to-list (function).
• umls-pathname (function).

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3.1.9 umlisp/create-sql.lisp

Dependency

parse-common.lisp (file).

Source

umlisp.asd.

Parent Component

umlisp (system).

Internals

• create-all-tables-cmdfile (function).
• create-custom-table-cmd (function).
• create-index-cmd (function).
• create-table-cmd (function).
• create-umls-db (function).
• create-umls-db-by-insert (function).
• custom-col-value (function).
• custom-col-values (function).
• custom-colnames-for-filename (function).
• custom-ucols-for-file (function).
• display-waste (function).
• drop-index-cmd (function).
• find-custom-col (function).
• find-custom-cols-for-filename (function).
• insert-col-value (function).
• insert-ustats-count (function).
• insert-values-cmd (function).
• make-noneng-index-file (function).
• make-usrl (function).
• make-ustats (function).
• max-umls-field (function).
• max-umls-row (function).
• mysql-copy-cmd (function).
• noneng-lang-index-files (function).
• pg-copy-cmd (function).
• remove-custom-cols (function).
• sql-create-custom-tables (function).
• sql-create-indexes (function).
• sql-create-indexes-mysql (function).
• sql-create-special-tables (function).
• sql-create-tables (function).
• sql-drop-tables (function).
• sql-insert-all-values (function).
• sql-insert-values (function).
• translate-all-files (function).
• translate-files (function).
• translate-line (function).
• translate-umls-file (function).
• umls-fixed-size-waste (function).
• verify-translation-file (function).

---

3.1.10 umlisp/sql-classes.lisp

Dependency

sql.lisp (file).

Source

umlisp.asd.

Parent Component

umlisp (system).

Public Interface

• *current-srl* (special variable).
• current-srl (function).
• find-cui-max (function).
• find-cui-normalized-word (function).
• find-cui-ucon-all (function).
• find-cui2-urel-cui (function).
• find-labr-bas (function).
• find-labr-eui (function).
• find-lagr-eui (function).
• find-lcmp-eui (function).
• find-lexterm-eui (function).
• find-lexterm-word (function).
• find-lmod-eui (function).
• find-lnom-eui (function).
• find-lprn-eui (function).
• find-lprp-eui (function).
• find-lspl-eui (function).
• find-ltrm-eui (function).
• find-ltyp-eui (function).
• find-lui-normalized-word (function).
• find-lwd-wrd (function).
• find-pfstr-cui (function).
• find-sdef-ui (function).
• find-sstr-rl (function).
• find-sstr-styrl (function).
• find-sstre1-ui (function).
• find-sstre1-ui2 (function).
• find-string-sui (function).
• find-sui-normalized-word (function).
• find-ucon-all (function).
• find-ucon-aui (function).
• find-ucon-cui (function).
• find-ucon-cui-sui (function).
• find-ucon-cuisui (function).
• find-ucon-lui (function).
• find-ucon-multiword (function).
• find-ucon-normalized-word (function).
• find-ucon-rel-cui2 (function).
• find-ucon-str (function).
• find-ucon-sui (function).
• find-ucon-tui (function).
• find-ucon-word (function).
• find-uconso-code (function).
• find-uconso-cui (function).
• find-uconso-cuisui (function).
• find-uconso-multiword (function).
• find-uconso-sui (function).
• find-uconso-word (function).
• find-udef-cui (function).
• find-udoc-key (function).
• find-udoc-key-value (function).
• find-udoc-value (function).
• find-urel-cui (function).
• find-urel-cui2 (function).
• find-usab-all (function).
• find-usab-rsab (function).
• find-usab-vsab (function).
• find-usat-ui (function).
• find-uso-aui (function).
• find-uso-cui (function).
• find-uso-cuisui (function).
• find-usrl-all (function).
• find-ustats-all (function).
• find-ustats-srl (function).
• find-ustr-all (function).
• find-ustr-cui-sui (function).
• find-ustr-cuilui (function).
• find-ustr-cuisui (function).
• find-ustr-multiword (function).
• find-ustr-normalized-word (function).
• find-ustr-sab (function).
• find-ustr-sui (function).
• find-ustr-word (function).
• find-usty-all (function).
• find-usty-cui (function).
• find-usty-sty (function).
• find-usty-tui (function).
• find-usty-word (function).
• find-uterm-cui (function).
• find-uterm-cuilui (function).
• find-uterm-lui (function).
• find-uterm-multiword (function).
• find-uterm-normalized-word (function).
• find-uterm-word (function).
• make-ucon-cui (function).
• map-ucon-all (function).
• set-current-srl (function).

Internals

• collect-umlisp-query (macro).
• collect-umlisp-query-eval (macro).
• ensure-aui-integer (macro).
• ensure-cui-integer (macro).
• ensure-eui-integer (macro).
• ensure-lui-integer (macro).
• ensure-rui-integer (macro).
• ensure-sui-integer (macro).
• ensure-tui-integer (macro).
• find-count-table (function).
• find-lrl-cui (function).
• find-sstre2-sty (function).
• find-ucon-all2 (function).
• find-ucon-noneng-word (function).
• find-udoc-all (function).
• find-uhier-all (function).
• find-uhier-cui (function).
• find-umap-cui (function).
• find-uobj-multiword (function).
• find-urank-all (function).
• find-urank-sab (function).
• find-urel-rui (function).
• find-usab-by-key (function).
• find-usmap-cui (function).
• find-ustr-noneng-word (function).
• insert-ustats (function).
• mrconso-query-word-cui (function).
• mrconso-query-word-sui (function).
• query-string (macro).
• query-string-eval (function).
• sort-score-pfstr-str (function).
• sort-score-umlsclass-str (function).
• sort-score-ustr-str (function).
• umlisp-query (macro).
• umlisp-query-eval (macro).

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3.1.11 umlisp/classes.lisp

Dependency

sql-classes.lisp (file).

Source

umlisp.asd.

Parent Component

umlisp (system).

Public Interface

• atn (reader method).
• atv (reader method).
• aui (reader method).
• aui (reader method).
• aui (reader method).
• bas (reader method).
• bas (reader method).
• bas (reader method).
• bas (reader method).
• bas (reader method).
• bas (reader method).
• bas (reader method).
• bas (reader method).
• bas (reader method).
• bas (reader method).
• bas2 (reader method).
• bas2 (reader method).
• code (reader method).
• code (reader method).
• code (reader method).
• cui (reader method).
• cui (reader method).
• cui (reader method).
• cui (reader method).
• cui (reader method).
• cui (reader method).
• cui (reader method).
• cui (reader method).
• cui1 (reader method).
• cui2 (reader method).
• cuilist (reader method).
• cvf (reader method).
• cvf (reader method).
• cvf (reader method).
• cvf (reader method).
• cvf (reader method).
• def (reader method).
• def (reader method).
• dockey (reader method).
• dtype (reader method).
• dvalue (reader method).
• eui (reader method).
• eui (reader method).
• eui (reader method).
• eui (reader method).
• eui (reader method).
• eui (reader method).
• eui (reader method).
• eui (reader method).
• eui (reader method).
• eui (reader method).
• eui (reader method).
• eui2 (reader method).
• eui2 (reader method).
• expl (reader method).
• hcd (reader method).
• imeta (reader method).
• ispref (reader method).
• kpfeng (reader method).
• labr (class).
• lagr (class).
• lat (reader method).
• lat (reader method).
• lat (reader method).
• lat (reader method).
• lat (reader method).
• lat (reader method).
• lat (reader method).
• lcmp (class).
• lexterm (class).
• lmod (class).
• lnom (class).
• lprn (class).
• lprp (class).
• lrl (reader method).
• lrl (reader method).
• lrl (reader method).
• lrl (reader method).
• lspl (class).
• ltrm (class).
• ltyp (class).
• lui (reader method).
• lui (reader method).
• lui (reader method).
• lui (reader method).
• lui (reader method).
• lwd (class).
• nstr (reader method).
• pfstr (reader method).
• pfstr (reader method).
• pfstr2 (reader method).
• rank (reader method).
• rcui (reader method).
• rel (reader method).
• rel (reader method).
• rel (reader method).
• rela (reader method).
• rela (reader method).
• rela (reader method).
• rela (reader method).
• rl (reader method).
• rl (reader method).
• rmeta (reader method).
• rsab (reader method).
• rui (reader method).
• s#def (reader method).
• s#def (reader method).
• s#rel (reader method).
• s#rel (reader method).
• s#sat (reader method).
• s#sat (reader method).
• s#sat (reader method).
• s#sat (reader method).
• s#so (reader method).
• s#so (reader method).
• s#so (reader method).
• s#str (reader method).
• s#sty (reader method).
• s#sty (reader method).
• s#term (reader method).
• s#term (reader method).
• sab (reader method).
• sab (reader method).
• sab (reader method).
• sab (reader method).
• sab (reader method).
• sab (reader method).
• sab (reader method).
• sab (reader method).
• saui (reader method).
• saui (reader method).
• scc (reader method).
• scit (reader method).
• scui (reader method).
• scui (reader method).
• sdef (class).
• sdui (reader method).
• sdui (reader method).
• sl (reader method).
• slc (reader method).
• srl (reader method).
• srl (reader method).
• srl (reader method).
• srl (reader method).
• srl (reader method).
• sstr (class).
• sstre1 (class).
• sstre2 (class).
• str (reader method).
• str (reader method).
• str (reader method).
• str (reader method).
• str (reader method).
• stt (reader method).
• stt (reader method).
• sty (reader method).
• sty (reader method).
• sty2 (reader method).
• sui (reader method).
• sui (reader method).
• sui (reader method).
• sui (reader method).
• sui (reader method).
• suppress (reader method).
• suppress (reader method).
• suppress (reader method).
• suppress (reader method).
• suppress (reader method).
• ts (reader method).
• ts (reader method).
• ts (reader method).
• tty (reader method).
• tty (reader method).
• tty (reader method).
• tui (reader method).
• ucon (class).
• udef (class).
• udoc (class).
• ui (reader method).
• ui (reader method).
• ui2 (reader method).
• ui3 (reader method).
• umlsclass (class).
• un (reader method).
• urank (class).
• urel (class).
• usab (class).
• usat (class).
• uso (class).
• usrl (class).
• ustr (class).
• usty (class).
• uterm (class).
• uxns (class).
• uxnw (class).
• uxw (class).
• vcui (reader method).
• vsab (reader method).
• wd (reader method).
• wd (reader method).

Internals

• abr (reader method).
• abr (reader method).
• agr (reader method).
• atnl (reader method).
• aui1 (reader method).
• aui2 (reader method).
• cas (reader method).
• cenc (reader method).
• cfr (reader method).
• cit (reader method).
• com (reader method).
• cuisui (reader method).
• curver (reader method).
• cxn (reader method).
• cxty (reader method).
• dir (reader method).
• euilist (reader method).
• ex (reader method).
• fea (reader method).
• fea (reader method).
• fea (reader method).
• fromexpr (reader method).
• fromexpr (reader method).
• fromid (reader method).
• fromres (reader method).
• fromrule (reader method).
• fromsid (reader method).
• fromtype (reader method).
• fromtype (reader method).
• gen (reader method).
• gnd (reader method).
• hits (reader method).
• kcuilrl (reader method).
• kcuilui (reader method).
• kcuisui (reader method).
• kluilrl (reader method).
• ksuilrl (reader method).
• ls (reader method).
• mapatn (reader method).
• mapatv (reader method).
• maprank (reader method).
• maprule (reader method).
• mapsetcui (reader method).
• mapsetcui (reader method).
• mapsetsab (reader method).
• mapsetsab (reader method).
• mapsubsetid (reader method).
• maptype (reader method).
• name (reader method).
• num (reader method).
• nwd (reader method).
• paui (reader method).
• pos (reader method).
• psnmod (reader method).
• ptr (reader method).
• qnt (reader method).
• rg (reader method).
• rh (reader method).
• rin (reader method).
• rt (reader method).
• s#abr (reader method).
• s#agr (reader method).
• s#cmp (reader method).
• s#hier (reader method).
• s#hier (reader method).
• s#map (reader method).
• s#map (reader method).
• s#mod (reader method).
• s#nom (reader method).
• s#prn (reader method).
• s#prp (reader method).
• s#smap (reader method).
• s#smap (reader method).
• s#spl (reader method).
• s#trm (reader method).
• s#typ (reader method).
• sabin (reader method).
• sca (reader method).
• sca (reader method).
• sca (reader method).
• sca (reader method).
• sca (reader method).
• sca (reader method).
• sca2 (reader method).
• sf (reader method).
• son (reader method).
• spv (reader method).
• srui (reader method).
• ssn (reader method).
• stnrtn (reader method).
• stype1 (reader method).
• stype2 (reader method).
• styrl (reader method).
• styrl (reader method).
• styrl2 (reader method).
• sver (reader method).
• tfr (reader method).
• toexpr (reader method).
• toexpr (reader method).
• toid (reader method).
• tores (reader method).
• torule (reader method).
• tosid (reader method).
• totype (reader method).
• totype (reader method).
• ttyl (reader method).
• typ (reader method).
• uconso (class).
• uhier (class).
• umap (class).
• usmap (class).
• ustats (class).
• uxnw-cuilist (reader method).
• uxw-noneng (class).
• vend (reader method).
• vstart (reader method).
• wrd (reader method).
• wrd (reader method).

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3.1.12 umlisp/class-support.lisp

Dependency

classes.lisp (file).

Source

umlisp.asd.

Parent Component

umlisp (system).

Public Interface

• cui-p (function).
• display-con (function).
• display-str (function).
• display-term (function).
• english-term-p (function).
• eui-p (function).
• filter-urels-by-rel (function).
• fmt-aui (generic function).
• fmt-cui (generic function).
• fmt-eui (generic function).
• fmt-lui (generic function).
• fmt-sui (generic function).
• fmt-tui (generic function).
• lat-abbr-info (function).
• lui-p (function).
• mesh-number (generic function).
• pf-ustr (generic function).
• pfstr (method).
• pfstr (method).
• print-umlsclass (function).
• rel-abbr-info (function).
• remove-english-terms (function).
• remove-non-english-terms (function).
• stt-abbr-info (function).
• sui-p (function).
• tui-p (function).
• ucon-has-sab (function).
• ucon-has-tui (function).
• ucon-ustrs (function).
• uso-unique-codes (function).

Internals

• *is-lat-table-init* (special variable).
• *is-rel-table-init* (special variable).
• *lat-info-table* (special variable).
• *rel-info-table* (special variable).
• +language-abbreviations+ (special variable).
• +relationship-abbreviations+ (special variable).
• check-ui (function).
• define-lookup-display (macro).
• english-term-filter (function).
• fmt-rui (generic function).

---

3.1.13 umlisp/composite.lisp

Dependency

sql-classes.lisp (file).

Source

umlisp.asd.

Parent Component

umlisp (system).

Public Interface

• find-ucon2-rel-str&sty (function).
• find-ucon2-rel-tui (function).
• find-ucon2-str&sty (function).
• find-ucon2-tui (function).
• find-ucon2_freq-rel-tui-all (function).
• find-ucon2_freq-tui-all (function).
• find-usrl_freq-all (function).
• find-usty_freq-all (function).
• tui-disease-or-syndrome (function).
• tui-finding (function).
• tui-sign-or-symptom (function).
• ucon-is-tui? (function).
• ucon_freq (class).
• usrl_freq (class).
• ustr_freq (class).
• usty_freq (class).

Internals

• freq (reader method).
• (setf freq) (writer method).
• freq (class).

---

5.1.1 Special variables

Special Variable: *current-srl* ¶

Package

umlisp.

Source

sql-classes.lisp.

Special Variable: *umls-sql-db* ¶

Package

umlisp.

Source

sql.lisp.

---

5.1.2 Macros

Macro: with-sql-connection ((conn) &body body) ¶

Package

umlisp.

Source

sql.lisp.

---

5.1.3 Ordinary functions

Function: cui-p (ui) ¶

Check if a string is a CUI

Package

umlisp.

Source

class-support.lisp.

Function: current-srl () ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: display-con (keyval &key stream vid file-wrapper english-only subobjects) ¶

Package

umlisp.

Source

class-support.lisp.

Function: display-str (keyval &key stream vid file-wrapper english-only subobjects) ¶

Package

umlisp.

Source

class-support.lisp.

Function: display-term (keyval &key stream vid file-wrapper english-only subobjects) ¶

Package

umlisp.

Source

class-support.lisp.

Function: english-term-p (obj) ¶

Returns two values: T/NIL if term is english and T/NIL if obj is a TERM

Package

umlisp.

Source

class-support.lisp.

Function: eui-p (ui) ¶

Package

umlisp.

Source

class-support.lisp.

Function: filter-urels-by-rel (urels rel &key remove-duplicate-pfstr2 sort) ¶

Package

umlisp.

Source

class-support.lisp.

Function: find-cui-max () ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-cui-normalized-word (word &key srl like) ¶

Return list of cui that match word, optionally use SQL’s LIKE syntax

Package

umlisp.

Source

sql-classes.lisp.

Function: find-cui-ucon-all (&key srl) ¶

Return list of CUIs for all ucons

Package

umlisp.

Source

sql-classes.lisp.

Function: find-cui2-urel-cui (cui &key srl) ¶

Return a list of urel for cui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-labr-bas (bas) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-labr-eui (eui) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-lagr-eui (eui) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-lcmp-eui (eui) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-lexterm-eui (eui) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-lexterm-word (wrd) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-lmod-eui (eui) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-lnom-eui (eui) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-lprn-eui (eui) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-lprp-eui (eui) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-lspl-eui (eui) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ltrm-eui (eui) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ltyp-eui (eui) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-lui-normalized-word (word &key srl like) ¶

Return list of cui that match word, optionally use SQL’s LIKE syntax

Package

umlisp.

Source

sql-classes.lisp.

Function: find-lwd-wrd (wrd) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-pfstr-cui (cui &key srl) ¶

Find preferred string for a cui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-sdef-ui (ui) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-sstr-rl (rl) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-sstr-styrl (styrl) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-sstre1-ui (ui) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-sstre1-ui2 (ui2) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-string-sui (sui &key srl) ¶

Return the string associated with sui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-sui-normalized-word (word &key srl like) ¶

Return list of cui that match word, optionally use SQL’s LIKE syntax

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ucon-all (&key srl) ¶

Return list of all ucon’s

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ucon-aui (aui &key srl) ¶

Find list of ucon for aui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ucon-cui (cui &key srl without-pfstr) ¶

Find ucon for a cui. If set SAB, the without-pfstr is on by default

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ucon-cui-sui (cui sui &key srl) ¶

Find ucon for cui/sui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ucon-cuisui (cuisui &key srl) ¶

Find ucon for cui/sui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ucon-lui (lui &key srl) ¶

Find list of ucon for lui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ucon-multiword (str &key srl only-exact-if-match limit sab) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ucon-normalized-word (word &key srl like) ¶

Return list of ucons that match word, optionally use SQL’s LIKE syntax

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ucon-rel-cui2 (cui2 &key srl) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ucon-str (str &key srl) ¶

Find ucon that are exact match for str

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ucon-sui (sui &key srl) ¶

Find list of ucon for sui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ucon-tui (tui &key srl) ¶

Find list of ucon for tui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ucon-word (word &key sab srl like) ¶

Return list of ucon that match word in matching SAB. Optionally, use SQL’s LIKE syntax

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ucon2-rel-str&sty (str sty) ¶

Find all ucons that are a relationship to concept named str and that have semantic type of sty

Package

umlisp.

Source

composite.lisp.

Function: find-ucon2-rel-tui (ucon tui) ¶

Return list of ucon’s that have related concepts to ucon and semantic type tui

Package

umlisp.

Source

composite.lisp.

Function: find-ucon2-str&sty (str sty lookup-func) ¶

Call lookup-func for ucon and usty for given str and sty

Package

umlisp.

Source

composite.lisp.

Function: find-ucon2-tui (ucon tui cui2-func related-con-func) ¶

Returns a list of related ucons that have specific tui

Package

umlisp.

Source

composite.lisp.

Function: find-ucon2_freq-rel-tui-all (tui) ¶

Sorted list of ucon_freq with semantic type tui that are rel’s of ucons with semantic type tui

Package

umlisp.

Source

composite.lisp.

Function: find-ucon2_freq-tui-all (tui ucon2-tui-func) ¶

Return sorted list of all ucon2 that have a semantic type tui with ucon that is also has sty of tui

Package

umlisp.

Source

composite.lisp.

Function: find-uconso-code (code &key first sab srl like) ¶

Return list of uconso objects that match code. Optional, filter for SAB. Optionally, use SQL’s LIKE syntax

Package

umlisp.

Source

sql-classes.lisp.

Function: find-uconso-cui (cui &key sab srl) ¶

Find uconso for a cui.

Package

umlisp.

Source

sql-classes.lisp.

Function: find-uconso-cuisui (cuisui &key sab srl) ¶

Find uconso for a cuisui.

Package

umlisp.

Source

sql-classes.lisp.

Function: find-uconso-multiword (str &key srl only-exact-if-match limit sab) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-uconso-sui (sui &key sab srl) ¶

Find uconso for a sui. If set SAB, the without-pfstr is on by default

Package

umlisp.

Source

sql-classes.lisp.

Function: find-uconso-word (word &key sab srl like) ¶

Return list of uconso that match word. Optionally, matching SAB. Optionally, use SQL’s LIKE syntax

Package

umlisp.

Source

sql-classes.lisp.

Function: find-udef-cui (cui &key srl) ¶

Return a list of udefs for cui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-udoc-key (key) ¶

Return list of abbreviation documentation for a key

Package

umlisp.

Source

sql-classes.lisp.

Function: find-udoc-key-value (dockey value) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-udoc-value (value) ¶

Return abbreviation documentation

Package

umlisp.

Source

sql-classes.lisp.

Function: find-urel-cui (cui &key srl filter without-pfstr2) ¶

Return a list of urel for cui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-urel-cui2 (cui2 &key srl) ¶

Return a list of urel for cui2

Package

umlisp.

Source

sql-classes.lisp.

Function: find-usab-all () ¶

Return all usab objects

Package

umlisp.

Source

sql-classes.lisp.

Function: find-usab-rsab (rsab &key current) ¶

Find usab for rsab

Package

umlisp.

Source

sql-classes.lisp.

Function: find-usab-vsab (vsab &key current) ¶

Find usab for vsab

Package

umlisp.

Source

sql-classes.lisp.

Function: find-usat-ui (cui &optional lui sui &key srl) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-uso-aui (aui &key srl) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-uso-cui (cui &key srl english-only limit) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-uso-cuisui (cui sui &key srl) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-usrl-all () ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-usrl_freq-all () ¶

Package

umlisp.

Source

composite.lisp.

Function: find-ustats-all (&key srl) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ustats-srl (srl) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ustr-all (&key srl) ¶

Return list of all ustr’s

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ustr-cui-sui (cui sui &key srl) ¶

Return the single ustr for cuisui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ustr-cuilui (cui lui &key srl) ¶

Return a list of ustr for cui/lui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ustr-cuisui (cuisui &key srl) ¶

Return the single ustr for cuisui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ustr-in-ucon (ucon sui) ¶

Package

umlisp.

Source

utils.lisp.

Function: find-ustr-in-uterm (uterm sui) ¶

Package

umlisp.

Source

utils.lisp.

Function: find-ustr-multiword (str &key srl only-exact-if-match limit sab) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ustr-normalized-word (word &key srl) ¶

Return list of ustrs that match word

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ustr-sab (sab &key srl) ¶

Return the list of ustr for sab

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ustr-sui (sui &key srl) ¶

Return the list of ustr for sui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-ustr-word (word &key sab srl like) ¶

Return list of ustr that match word in matching SAB. Optionally, use SQL’s LIKE syntax

Package

umlisp.

Source

sql-classes.lisp.

Function: find-usty-all () ¶

Return list of usty’s for all semantic types

Package

umlisp.

Source

sql-classes.lisp.

Function: find-usty-cui (cui &key srl) ¶

Return a list of usty for cui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-usty-sty (sty) ¶

Find usty for a sty

Package

umlisp.

Source

sql-classes.lisp.

Function: find-usty-tui (tui) ¶

Find usty for tui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-usty-word (word &key srl) ¶

Return a list of usty that match word

Package

umlisp.

Source

sql-classes.lisp.

Function: find-usty_freq-all () ¶

Package

umlisp.

Source

composite.lisp.

Function: find-uterm-cui (cui &key srl) ¶

Return a list of uterm for cui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-uterm-cuilui (cui lui &key srl) ¶

Return single uterm for cui/lui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-uterm-in-ucon (ucon lui) ¶

Package

umlisp.

Source

utils.lisp.

Function: find-uterm-lui (lui &key srl) ¶

Return a list of uterm for lui

Package

umlisp.

Source

sql-classes.lisp.

Function: find-uterm-multiword (str &key srl only-exact-if-match limit) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: find-uterm-normalized-word (word &key srl) ¶

Return list of uterms that match word

Package

umlisp.

Source

sql-classes.lisp.

Function: find-uterm-word (word &key srl) ¶

Return list of uterms that match word

Package

umlisp.

Source

sql-classes.lisp.

Function: lat-abbr-info (lat) ¶

Package

umlisp.

Source

class-support.lisp.

Function: lui-p (ui) ¶

Check if a string is a LUI

Package

umlisp.

Source

class-support.lisp.

Function: make-ucon-cui (cui) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: map-ucon-all (fn &key srl) ¶

Map a function over all ucon’s

Package

umlisp.

Source

sql-classes.lisp.

Function: parse-cui (cui) ¶

Package

umlisp.

Source

utils.lisp.

Function: parse-eui (eui) ¶

Package

umlisp.

Source

utils.lisp.

Function: parse-lui (lui) ¶

Package

umlisp.

Source

utils.lisp.

Function: parse-sui (sui) ¶

Package

umlisp.

Source

utils.lisp.

Function: parse-tui (tui) ¶

Package

umlisp.

Source

utils.lisp.

Function: print-umlsclass (obj &key stream vid file-wrapper english-only subobjects refvars link-printer) ¶

Package

umlisp.

Source

class-support.lisp.

Function: rel-abbr-info (rel) ¶

Package

umlisp.

Source

class-support.lisp.

Function: remove-english-terms (uterms) ¶

Package

umlisp.

Source

class-support.lisp.

Function: remove-non-english-terms (uterms) ¶

Package

umlisp.

Source

class-support.lisp.

Function: set-current-srl (srl) ¶

Package

umlisp.

Source

sql-classes.lisp.

Function: set-umls-path (p) ¶

Package

umlisp.

Source

data-structures.lisp.

Function: set-umls-sql-db (db) ¶

Package

umlisp.

Source

sql.lisp.

Function: set-umls-sql-host (h) ¶

Package

umlisp.

Source

sql.lisp.

Function: set-umls-sql-passwd (p) ¶

Package

umlisp.

Source

sql.lisp.

Function: set-umls-sql-type (h) ¶

Package

umlisp.

Source

sql.lisp.

Function: set-umls-sql-user (u) ¶

Package

umlisp.

Source

sql.lisp.

Function: sql-disconnect (conn) ¶

Disconnect from UMLS database, but put connection back into pool

Package

umlisp.

Source

sql.lisp.

Function: sql-disconnect-pooled () ¶

Package

umlisp.

Source

sql.lisp.

Function: stt-abbr-info (stt) ¶

Package

umlisp.

Source

class-support.lisp.

Function: sui-p (ui) ¶

Check if a string is a SUI

Package

umlisp.

Source

class-support.lisp.

Function: tui-disease-or-syndrome () ¶

Package

umlisp.

Source

composite.lisp.

Function: tui-finding () ¶

Package

umlisp.

Source

composite.lisp.

Function: tui-p (ui) ¶

Package

umlisp.

Source

class-support.lisp.

Function: tui-sign-or-symptom () ¶

Package

umlisp.

Source

composite.lisp.

Function: ucon-has-sab (ucon sab) ¶

Package

umlisp.

Source

class-support.lisp.

Function: ucon-has-tui (ucon tui) ¶

Returns T if UCON has a semantic type of TUI.

Package

umlisp.

Source

class-support.lisp.

Function: ucon-is-tui? (ucon tui) ¶

Returns t if ucon has a semantic type of tui

Package

umlisp.

Source

composite.lisp.

Function: ucon-ustrs (ucon) ¶

Return lists of strings for a concept

Package

umlisp.

Source

class-support.lisp.

Function: umls-sql-db () ¶

Package

umlisp.

Source

sql.lisp.

Function: umls-sql-host () ¶

Package

umlisp.

Source

sql.lisp.

Function: umls-sql-passwd () ¶

Package

umlisp.

Source

sql.lisp.

Function: umls-sql-type () ¶

Package

umlisp.

Source

sql.lisp.

Function: umls-sql-user () ¶

Package

umlisp.

Source

sql.lisp.

Function: uso-unique-codes (usos) ¶

Package

umlisp.

Source

class-support.lisp.

---